Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25270 254 / 1e-82 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G68170 237 / 6e-76 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 225 / 7e-71 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G09380 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01440 206 / 2e-63 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G30340 203 / 1e-62 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 198 / 3e-60 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 197 / 3e-60 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 186 / 1e-55 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08300 185 / 2e-55 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108600 [exp] 323 / 3e-109 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G182700 [exp] 218 / 3e-68 AT4G01440 298 / 2e-99 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G149000 [exp] 218 / 4e-68 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 215 / 1e-66 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G453000 [exp] 213 / 2e-66 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 214 / 3e-66 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 213 / 3e-66 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 210 / 3e-65 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.014G108500 [exp] 210 / 3e-65 AT3G30340 361 / 8e-124 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020987 [exp] 327 / 3e-110 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020819 [exp] 268 / 2e-87 AT1G25270 262 / 6e-85 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020817 [exp] 265 / 3e-86 AT1G25270 274 / 8e-90 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10012691 [exp] 263 / 2e-85 AT1G25270 259 / 1e-83 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10031437 [exp] 219 / 3e-68 AT1G09380 438 / 8e-154 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 216 / 1e-66 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10001523 [exp] 211 / 2e-65 AT1G09380 446 / 6e-157 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 207 / 1e-63 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 205 / 6e-63 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 203 / 4e-62 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.001G307900.1 pacid=42791019 polypeptide=Potri.001G307900.1.p locus=Potri.001G307900 ID=Potri.001G307900.1.v4.1 annot-version=v4.1 ATGGCATGCACTTGCTTCGGTAGTGTTCACCCAGGTATTGCCATGATATTTGTTCAGATCGTGTTTGGAGGGATCAATATTTTCTACAAGCTGGTTATCA ATGATGGCATGAGCATAAGGGTAGCAGTTGCTTATCGCTTGCTTTTTGGTGCAGCCTTCCTGTGTCCTATTGCTCTCATTGTTGAAAGGAACAAGAGACC AAAGCTGACATGGGTTGTCTTCTTTCAGATATTCTTCCTTGCTCTATTCGGGGGATCAATATACCACAATTTATACCTGGCAAGCTTAAACTTAACATCC ATGACATTTGCTGCAGCTTTGTACAATCTTAGCCCAGCATTTACGTACATAGTTGCCCTCCTTTTCAGGATGGAAACTTTGTCACTAAATAATGCACGGG GGATAGCTAATGTGGCAGGCACTGCAATATGCATAGGAGGCGCAATGCTGCTTACATTTTACAAAGGCATTGAGATCAACATCTGGCACACCAACATTAA TCTTCTGAAATATCATCATAATCATCACCAGAACACTGCGAAAATTAATGAGAGGTACCCATGCTTCTACTCCAGTACAGCTTTGATGAGTTTGATGGGA TCAATTCAGGCTATTATTTATGCACTTTGCTTTGAAAGGAAATGGTCTGACTGGAAGCTTGAATCGAACATCCGCCTCATTTCTGTCATTTACTTGGGGT TCTTAGCATCTGGGCTGAATATCACTTTGATGGCATGGTGCATAGCTAAAAGAGGCCCATTATATGTAGCCATCTTCAATCCCTTGATGCTTTTGGTTGT GGCATTGGCAGGTTCCCTGGTCTTTCAAGAGAAACTTCATTTGGGAAGCATATTGGGGGGAGTGTTGATAATAACTGGATTATACACCGTGCTGTGGGGG AAAAGTAAAAATGCGAAGAACAAAAAGCAACCTGCAGTGTTGCCAAACAATTCTGATCAGGAATCACCAGAGGTTGCTGTTACCCCTCAATCTGAAGTCA ATAAAGGTAGCGCTGTGTAG
AA sequence Show only first row Show all	>Potri.001G307900.1 pacid=42791019 polypeptide=Potri.001G307900.1.p locus=Potri.001G307900 ID=Potri.001G307900.1.v4.1 annot-version=v4.1 MACTCFGSVHPGIAMIFVQIVFGGINIFYKLVINDGMSIRVAVAYRLLFGAAFLCPIALIVERNKRPKLTWVVFFQIFFLALFGGSIYHNLYLASLNLTS MTFAAALYNLSPAFTYIVALLFRMETLSLNNARGIANVAGTAICIGGAMLLTFYKGIEINIWHTNINLLKYHHNHHQNTAKINERYPCFYSSTALMSLMG SIQAIIYALCFERKWSDWKLESNIRLISVIYLGFLASGLNITLMAWCIAKRGPLYVAIFNPLMLLVVALAGSLVFQEKLHLGSILGGVLIITGLYTVLWG KSKNAKNKKQPAVLPNNSDQESPEVAVTPQSEVNKGSAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25270			nodulin MtN21 /EamA-like trans...		Potri.001G307900 [exp]	0	1

Compare expression of checked genes

Potri.001G307900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.