Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25830 507 / 3e-174 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 507 / 3e-174 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT3G25810 502 / 2e-172 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT2G24210 489 / 2e-167 AtTPS10 terpene synthase 10 (.1) AT4G16740 486 / 1e-166 ATTPS03 terpene synthase 03 (.1.2) AT4G16730 474 / 3e-162 AtTPS02 terpene synthase 02 (.1) AT5G23960 300 / 9e-95 ATTPS21 terpene synthase 21 (.1.2) AT1G61680 293 / 2e-91 ATTPS14 terpene synthase 14 (.1.2) AT1G70080 284 / 1e-87 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 249 / 2e-74 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G308200 [exp] 1189 / 0 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.019G023006 [exp] 692 / 0 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 676 / 0 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G022338 [exp] 669 / 0 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G118600 [exp] 527 / 0 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 494 / 4e-169 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.019G023020 [exp] 475 / 2e-165 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G119700 [exp] 467 / 1e-157 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.011G031800 [exp] 431 / 7e-145 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018500 [exp] 431 / 8e-145 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2) Lus10039713 [exp] 408 / 3e-135 AT4G16740 409 / 4e-136 terpene synthase 03 (.1.2) Lus10018501 [exp] 399 / 7e-132 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2) Lus10006356 [exp] 382 / 6e-125 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10033643 [exp] 380 / 3e-124 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10006355 [exp] 378 / 2e-123 AT2G24210 361 / 7e-117 terpene synthase 10 (.1) Lus10012312 [exp] 372 / 3e-121 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2) Lus10001110 [exp] 363 / 6e-119 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10038179 [exp] 361 / 2e-117 AT3G25810 351 / 2e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10025922 [exp] 356 / 2e-115 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G308300.1 pacid=42790495 polypeptide=Potri.001G308300.1.p locus=Potri.001G308300 ID=Potri.001G308300.1.v4.1 annot-version=v4.1 ATGGCTCTTTACCAACTTGCTCCATTCCCTATTAGTACTGTCACCAAACGGACATTTTCAAGTCGCAACTCACTAGGATCATCAAGAAATGGCTGTTTCC CTAGCCAAGTTCGGTGCATGGTAGCGACCGAAACTTGTGATCAAAGCATTGCCAGGCGCTCTGGAAATTATCCCACTCCCTTCTGGGATCATAAGTTTCT TCAGTCACTGACAAGTGAATATGTGGGAGAGCCATACACAGGACAAGCTAACAAACTGAAGGAAACTGTGAGGGACATGCTTGAGAAACCATTGGATGCT GTATATCAACTGGAGCTAATTGACAACCTCCAAAGACTTGGAGTTGCTTATCATTTCGAGCTTGAGATAAAGAGCATTCTGGAAAGCAGGTGGAATGATT ATAAAAAAGACAACAGAGAGATGAAAGAGGACTTGTATGGTACTTCTGTTGAATTTAGACTGCTAAGGCAGCATGGATATAATGTGCCTCAAGATGTTTT CAATAGCTTCAAGGATGAGCAAGGAAACTTCAAGAATTGTCTTCGCGATGATGTCAAAGGGATGCTAAATCTATATGAAGCCTCTTATTATCTAGTAAAT GGTGAGAGTATCTTAGAAGAAGCGAGAGATTTTTCTGAAAAACATCTCAAGGAATATAGCAAGGAACAGAATGAAGATCATTATCTTTCACTGTTGGTGA ATCATTCATTGGAACTTCCACTGCATTGGAGGATGCAAAGGATGGAAGCAAGATGGTTCATAGATGCATATGGAAGAAAAAGGGACTTGAACCCCATCCT TCTAGAGTTTGCTGGATTGGATTTCAACATGGTTCAAGCAAAATACCAGGAAGACATAAGACATGCATCAAGGTGGTGGACTAGTATGGATCTAGGAAAC AAGTTGTTCTACACCAGGGACAGATTGATGGAGAACACTTTGTGGACGGTAGGAGAGGTATTTGAGCCTCAGTTTGGATATTATCGAAAAATGGCGACCA GGGTTAATGCTCTGATAACAACATTAGATGATGCTTACGATGTGTATGGCACCCTCGAAGAACTTGAGGTCTTCACAGATGTTATTGAGAGCTGGGATAT CAATGCATTGGACCAACTGCCATACTACATGAAGATATCTTTCTTTGCTCTCTTCCAGTCCATCAATGAAATCGGTTACAATATTCTTAAAGAACAAGGA ATAAATGTTGTTCCTTCCCTGAAGAAATTGTGGGGAGATTTATGTCGAGCATTTCTTAAAGAGGCAAAGTGGTACTACGCTGGATACACACCAACTCTAC AAGAATACCTTGATAATGCTTGGTTGTCAATATCCGGACAAGTCATACTAGGGCATGCTTTCTTCTTGGTTACAAATCAATTGACAGAGGAGGCTGTAAG ATGTTGCATGGAATATCCTGACTTAATTCGTTACTCGTCAACAATTCTACGACTCGCAGATGATCTAGGAACATCTTCGGATGAGATTGCTAGAGGTGAT AATCCAAAATCAATTCAGTGTTACATGCATGAAACTGGAGCGACTGAACAAGAAGCTCGTGAGCATGTACGATATTTGATACACGAGACGTGGAAAAAGC TAAATGCAGAGATATTGAAGCCATATCCCTTTTCTAAAAAATTCATGGGAATTCCAATGGATCTTGCAAGGACTGCTCAGTGTTTCTATGAAGCTGGAGA TGCGTATGGAATTCAAGATCAGGAGACTCATGGTCGCCTGGTGTCATTGTTTGTTAAGCCCATTCCTCTCCAAGATATATAG
AA sequence Show only first row Show all	>Potri.001G308300.1 pacid=42790495 polypeptide=Potri.001G308300.1.p locus=Potri.001G308300 ID=Potri.001G308300.1.v4.1 annot-version=v4.1 MALYQLAPFPISTVTKRTFSSRNSLGSSRNGCFPSQVRCMVATETCDQSIARRSGNYPTPFWDHKFLQSLTSEYVGEPYTGQANKLKETVRDMLEKPLDA VYQLELIDNLQRLGVAYHFELEIKSILESRWNDYKKDNREMKEDLYGTSVEFRLLRQHGYNVPQDVFNSFKDEQGNFKNCLRDDVKGMLNLYEASYYLVN GESILEEARDFSEKHLKEYSKEQNEDHYLSLLVNHSLELPLHWRMQRMEARWFIDAYGRKRDLNPILLEFAGLDFNMVQAKYQEDIRHASRWWTSMDLGN KLFYTRDRLMENTLWTVGEVFEPQFGYYRKMATRVNALITTLDDAYDVYGTLEELEVFTDVIESWDINALDQLPYYMKISFFALFQSINEIGYNILKEQG INVVPSLKKLWGDLCRAFLKEAKWYYAGYTPTLQEYLDNAWLSISGQVILGHAFFLVTNQLTEEAVRCCMEYPDLIRYSSTILRLADDLGTSSDEIARGD NPKSIQCYMHETGATEQEAREHVRYLIHETWKKLNAEILKPYPFSKKFMGIPMDLARTAQCFYEAGDAYGIQDQETHGRLVSLFVKPIPLQDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.001G308300 [exp]	0	1
AT3G25810			Terpenoid cyclases/Protein pre...		Potri.001G308200 [exp]	1.00	0.9930
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G215001 [exp]	2.82	0.9534
AT5G62280			Protein of unknown function (D...		Potri.015G130500 [exp]	4.89	0.9413
AT4G35160			O-methyltransferase family pro...		Potri.013G122100 [exp]	5.29	0.9193
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.005G181500 [exp]	6.92	0.9089
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Potri.013G007700 [exp]	14.56	0.8210
AT4G35160			O-methyltransferase family pro...		Potri.013G120800 [exp]	14.83	0.9065	FOMT11,OOMT2.19
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027800 [exp]	15.00	0.9079
AT1G73165		CLE1	CLAVATA3/ESR-RELATED 1 (.1)		Potri.011G096800 [exp]	16.30	0.9095
					Potri.011G126051 [exp]	18.57	0.8508

Compare expression of checked genes

Potri.001G308300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.