Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76880 350 / 2e-114 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 232 / 2e-69 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT5G03680 181 / 3e-50 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT5G28300 154 / 2e-40 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G33240 147 / 9e-38 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT3G10000 139 / 5e-36 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT5G47660 132 / 4e-34 Trihelix Homeodomain-like superfamily protein (.1) AT3G25990 67 / 8e-12 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 64 / 5e-11 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT5G01380 52 / 5e-07 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G010200 [exp] 749 / 0 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068400 [exp] 378 / 4e-125 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068600 [exp] 251 / 2e-76 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.005G192000 [exp] 246 / 1e-74 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.008G025600 [exp] 229 / 2e-68 AT5G03680 353 / 6e-115 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Potri.010G235000 [exp] 216 / 3e-63 AT5G03680 338 / 5e-109 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Potri.018G049500 [exp] 179 / 6e-52 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049301 [exp] 178 / 4e-50 AT1G76890 158 / 2e-42 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049700 [exp] 179 / 2e-49 AT1G76890 148 / 5e-38 Duplicated homeodomain-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033504 [exp] 429 / 4e-147 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 385 / 2e-129 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10042806 [exp] 377 / 3e-124 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10029778 [exp] 377 / 1e-123 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10028584 [exp] 218 / 2e-65 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10018888 [exp] 218 / 6e-64 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10028582 [exp] 172 / 2e-49 AT1G76880 219 / 2e-66 Duplicated homeodomain-like superfamily protein (.1) Lus10018887 [exp] 167 / 9e-45 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10027718 [exp] 135 / 7e-35 AT5G03680 297 / 3e-95 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10015924 [exp] 136 / 2e-34 AT5G28300 231 / 2e-68 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G309100.3 pacid=42793646 polypeptide=Potri.001G309100.3.p locus=Potri.001G309100 ID=Potri.001G309100.3.v4.1 annot-version=v4.1 ATGGAAACTTCAACAACTTTCCCGGAAAATTCAAACGCCGCCACCGGTAACCGGGATAGTGATGAAGGCGATGAAGAGATGAGAGTGAAAGCTGAAGAGG GTGACCAGCACTCAACAGGGAACAGGTGGCCAAAGCAAGAGACTTTAGCGTTGTTGAAGATAAGGTCTGATATGGATGTTGCATTTAAAGACTCTGGTCT TAAAGCTCCTCTATGGGAAGAGGTTTCAAAGAAATTGAATGAGCTTGGGTATAACAGAAGTGCCAAGAAATGCAAAGAGAAGTTTGAGAATATTTACAAG TATCATAGAAGAACCAAGGAAGGCCGGTCCGGTAGGCCAAATGGCAAGACATATAGGTTTTTTGAACAATTACAAGCTTTAGATAACACTGAGGTATTAC TGCCACCTCCATCGTCAGATAAAGTTCATACTTCTATGGCCGCAGCCTTGGTGAACCCAGTAAGTTTCATTCCAAATGCTGTTCCATGTTCTATCCAAAG CCCTGGTATGAATTTTGTCGACACTACCTCTACTTCAACTGCATCTACTTCAAGTGAAGAAGAGGAAGGAACGAGAAAGAAGAAGCAGAAATTAACAGGT TTTTTTGAGAGGTTGATGAAGGAAGTGATTGAGAAGCAAGAGAATTTGCAAAATAAGTTTCTAGAAGCAATAGAGAAATGCGAGCAAGAAAGGATAGCTA GAGAAGAAGCATGGAAGATGCAAGAATTGGATAGGATTAAGAGAGAACGGGAGCTTTTAGTTCGAGAAAGAGCGATTGCAGCTGCAAAAGATGCAGCCGT GCTTGCATTCTTACAGAAGTTCTCTGAGCAAGGTATCTCGGTGCAATTGCCTGACAATCCTATAGTTCCGATGAAATTTCCTGACAATCAAACAGTTCCA GTGCCATCGTCTGCTCCAGTGCAATTGCCCAAGAACCAAGCAGTTCCAGTGGAGAATATTGTGAAGACCCGTGAAAATAGCAGTATTGAGAGTTTTGTTA ATATTAGCCCATCAAGATGGCCTAAAGAAGAAATTGAAGCTTTGATCGGGCTAAGAACTAAGCTTGAATTCCAGTATGAAGAAAATGGACCAAAAGGGCC ACTGTGGGAGGAGATATCAGCTTCAATGAAAAAGCTTGGTTATGATAGGAGTGCAAAGAGATGCAAAGAGAAATGGGAGAATATGAACAAGTACTTCAAG AGGGTAAAGGAGAGCAATAAAAGAAGACCTGGGGATTCAAAAACTTGTCCTTATTTCCAACAGCTTGATGCTCTATACAGAGAGAAGAATAGGAGGGTTG ATGGTTCGGGTTTTGAGTTGAAGCCTGAAGAACTTTTAATGCATATGATGGGTGGCCAAGGAGATCAACAACAGCCGGAATCTGCCACGACAGAAGACAG AGAAAGTGAAAATGTTGATCAGAATCAAGAAAACTACAGAGACAAGGAAGACGGGGACGGCGATCGAATTGTAGCTAATGATCCTTCTTCAATGGAAATT ATGGAGTGA
AA sequence Show only first row Show all	>Potri.001G309100.3 pacid=42793646 polypeptide=Potri.001G309100.3.p locus=Potri.001G309100 ID=Potri.001G309100.3.v4.1 annot-version=v4.1 METSTTFPENSNAATGNRDSDEGDEEMRVKAEEGDQHSTGNRWPKQETLALLKIRSDMDVAFKDSGLKAPLWEEVSKKLNELGYNRSAKKCKEKFENIYK YHRRTKEGRSGRPNGKTYRFFEQLQALDNTEVLLPPPSSDKVHTSMAAALVNPVSFIPNAVPCSIQSPGMNFVDTTSTSTASTSSEEEEGTRKKKQKLTG FFERLMKEVIEKQENLQNKFLEAIEKCEQERIAREEAWKMQELDRIKRERELLVRERAIAAAKDAAVLAFLQKFSEQGISVQLPDNPIVPMKFPDNQTVP VPSSAPVQLPKNQAVPVENIVKTRENSSIESFVNISPSRWPKEEIEALIGLRTKLEFQYEENGPKGPLWEEISASMKKLGYDRSAKRCKEKWENMNKYFK RVKESNKRRPGDSKTCPYFQQLDALYREKNRRVDGSGFELKPEELLMHMMGGQGDQQQPESATTEDRESENVDQNQENYRDKEDGDGDRIVANDPSSMEI ME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Potri.001G309100 [exp]	0	1
AT2G34930			disease resistance family prot...		Potri.010G106900 [exp]	3.00	0.9075
AT3G27150			Galactose oxidase/kelch repeat...		Potri.001G331500 [exp]	5.09	0.9283
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024404 [exp]	5.83	0.9233
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.011G121200 [exp]	11.22	0.8975
AT1G75800			Pathogenesis-related thaumatin...		Potri.004G014574 [exp]	11.57	0.8507
AT5G47390	MYB		myb-like transcription factor ...		Potri.003G079500 [exp]	17.66	0.8721
AT2G40095			Alpha/beta hydrolase related p...		Potri.010G189600 [exp]	18.89	0.8876
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.003G187032 [exp]	19.28	0.9050
					Potri.019G017304 [exp]	19.79	0.8977
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Potri.009G098966 [exp]	22.75	0.8990

Compare expression of checked genes

Potri.001G309100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.