Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PEAC14.1,ACT1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09810 775 / 0 ACT2/7, ACT7 actin 7 (.1) AT3G53750 761 / 0 ACT3 actin 3 (.1) AT2G37620 761 / 0 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT3G12110 759 / 0 ACT11 actin-11 (.1) AT3G46520 752 / 0 ACT12 actin-12 (.1) AT5G59370 750 / 0 ACT4 actin 4 (.1.2) AT1G49240 748 / 0 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G18780 746 / 0 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT2G42100 671 / 0 Actin-like ATPase superfamily protein (.1) AT2G42090 567 / 0 ACT9 actin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G010400 [exp] 783 / 0 AT5G09810 774 / 0.0 actin 7 (.1) Potri.016G045500 [exp] 769 / 0 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 769 / 0 AT3G12110 767 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 768 / 0 AT3G12110 765 / 0.0 actin-11 (.1) Potri.010G204300 [exp] 766 / 0 AT3G12110 733 / 0.0 actin-11 (.1) Potri.001G453600 [exp] 764 / 0 AT5G09810 769 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 730 / 0 AT5G09810 731 / 0.0 actin 7 (.1) Potri.006G139900 [exp] 575 / 0 AT5G09810 554 / 0.0 actin 7 (.1) Potri.001G326600 [exp] 356 / 3e-121 AT3G27000 758 / 0.0 WURM, actin related protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005819 [exp] 777 / 0 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 777 / 0 AT5G09810 778 / 0.0 actin 7 (.1) Lus10006783 [exp] 777 / 0 AT5G09810 778 / 0.0 actin 7 (.1) Lus10006784 [exp] 768 / 0 AT5G09810 769 / 0.0 actin 7 (.1) Lus10005457 [exp] 768 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 768 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10016558 [exp] 768 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10029286 [exp] 764 / 0 AT3G46520 768 / 0.0 actin-12 (.1) Lus10001694 [exp] 763 / 0 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005163 [exp] 763 / 0 AT3G12110 766 / 0.0 actin-11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00022 [poplar] [flax] Actin Actin
Representative CDS sequence Show only first row Show all	>Potri.001G309500.1 pacid=42789028 polypeptide=Potri.001G309500.1.p locus=Potri.001G309500 ID=Potri.001G309500.1.v4.1 annot-version=v4.1 ATGGCCGATGCCGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGGTTTGCAGGTGATGATGCACCCAGGGCAGTGTTTC CCAGTATTGTGGGTAGACCAAGACACACTGGTGTCATGGTTGGAATGGGGCAGAAGGATGCCTATGTTGGTGATGAAGCACAATCTAAAAGAGGTATCTT GACCTTGAAATACCCCATTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAGAAGATTTGGCATCACACTTTCTACAATGAGCTTCGTGTTGCTCCT GAAGAGCACCCAGTCCTCCTGACTGAGGCTCCCCTCAACCCTAAGGCTAACAGAGAGAAGATGACTCAAATTATGTTTGAGACCTTCAATGTTCCTGCAA TGTATGTTGCCATCCAGGCTGTCCTTTCCCTGTATGCCAGTGGTCGTACAACTGGTATTGTGTTGGATTCTGGTGATGGTGTGAGTCACACTGTGCCAAT CTATGAAGGTTATGCCCTTCCACACGCCATCCTTCGTTTGGATCTTGCTGGTCGTGACCTCACCGATGCTTTGATGAAGATTCTGACTGAGAGAGGTTAC ATGTTCACCACCACTGCTGAACGGGAAATTGTCCGTGATATGAAGGAGAAACTTGCGTATGTTGCCCTCGACTACGAGCAGGAGCTTGAGACTGCCAAGA GCAGCTCCTCTGTTGAGAAGAACTACGAGCTTCCTGATGGTCAGGTCATCACCATCGGAGCTGAGAGATTCCGTTGCCCAGAAGTCCTCTTCCAGCCTTC TCTCATTGGAATGGAAGCTGCTGGCATCCACGAGACTACATACAACTCAATCATGAAGTGTGATGTGGATATTAGAAAGGATCTGTATGGTAACATTGTG CTCAGTGGTGGTTCCACTATGTTCCCTGGTATTGCTGACCGAATGAGCAAGGAGATCACCGCCCTTGCCCCAAGCAGCATGAAGATCAAGGTGGTTGCAC CACCAGAGAGAAAGTACAGTGTCTGGATTGGAGGATCTATCCTTGCTTCCCTCAGCACCTTCCAGCAGATGTGGATTTCCAAGGGTGAGTATGATGAGTC TGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA
AA sequence Show only first row Show all	>Potri.001G309500.1 pacid=42789028 polypeptide=Potri.001G309500.1.p locus=Potri.001G309500 ID=Potri.001G309500.1.v4.1 annot-version=v4.1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY MFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.001G309500 [exp]	0	1	Pt-PEAC14.1,ACT1
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.019G010400 [exp]	1.00	0.9606	PEAC14.4
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Potri.004G133500 [exp]	2.44	0.8949	Pt-CDC2.1,1
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Potri.002G251000 [exp]	4.47	0.8358
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Potri.010G222700 [exp]	4.79	0.8324	Pt-PIP2.3
AT4G32150		ATVAMP711, VAMP...	vesicle-associated membrane pr...		Potri.018G025800 [exp]	6.92	0.8794	VAMP712.1
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.002G103800 [exp]	7.41	0.8656	VF14.1
AT4G38510			ATPase, V1 complex, subunit B ...		Potri.009G137800 [exp]	8.66	0.8311
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.009G028200 [exp]	8.71	0.8867	Pt-ADF1.1
AT2G46170			Reticulon family protein (.1.2...		Potri.002G165400 [exp]	11.18	0.8836
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Potri.010G157600 [exp]	20.19	0.8692

Compare expression of checked genes

Potri.001G309500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.