Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49230 261 / 7e-89 RING/U-box superfamily protein (.1) AT1G49210 214 / 2e-70 RING/U-box superfamily protein (.1) AT1G49220 214 / 9e-70 RING/U-box superfamily protein (.1) AT1G49200 212 / 2e-69 RING/U-box superfamily protein (.1) AT3G18773 198 / 5e-64 RING/U-box superfamily protein (.1) AT5G05280 149 / 3e-45 RING/U-box superfamily protein (.1) AT3G10910 140 / 8e-42 RING/U-box superfamily protein (.1) AT1G76410 126 / 2e-36 ATL8 RING/U-box superfamily protein (.1) AT5G01880 124 / 5e-36 RING/U-box superfamily protein (.1) AT1G20823 120 / 7e-34 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G010500 [exp] 392 / 2e-140 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 254 / 5e-86 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 228 / 6e-76 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 172 / 6e-54 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 159 / 3e-49 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 156 / 6e-48 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 144 / 2e-43 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 137 / 1e-40 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 133 / 2e-39 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033515 [exp] 225 / 4e-74 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10020859 [exp] 218 / 2e-71 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10005814 [exp] 214 / 2e-70 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10006788 [exp] 214 / 2e-70 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10005817 [exp] 211 / 9e-69 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10006785 [exp] 199 / 2e-64 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10005815 [exp] 181 / 4e-57 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10006786 [exp] 172 / 4e-54 AT1G49230 176 / 9e-56 RING/U-box superfamily protein (.1) Lus10005816 [exp] 168 / 2e-52 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1) Lus10006787 [exp] 160 / 3e-49 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G309600.1 pacid=42790668 polypeptide=Potri.001G309600.1.p locus=Potri.001G309600 ID=Potri.001G309600.1.v4.1 annot-version=v4.1 ATGTCTACTTCTACTTCAACAACTCATCAACTCTTTCAAGGTTTTCTTGGGGATTTCTACTCAAGAAGACTGCTATTACATACCCCTCTCTACCAATCAT CAAACACGGCAACTCCTCCAGCTCCTGGAAACACTGCCTCGTCTGAAACTTACACTAGCACTGACAACAGCTTTGATGCAAATGTTGTTATGGTTCTGTC AGTCCTGTTATGTGCACTGATTTGCTCACTTGGACTAAATTCCATCATCAGGTGTGCATTAAGGTGCTCTAATTTGGTAGCTTCAGAATCTGCTGCAAAC CCCTCGACTCAGGCAGCGAACACTGGAGTGAAACGAAAAGCATTGAAGACTTTCCCAATAGTAAAATACTCAACTGACTTGAACCTGCCTGGTCTTGACA CACAGTGTGTAATCTGTCTCTCAGAGTTCACACCAGGTGAACATGTTCGGCTTCTGCCTAAGTGCAACCATGGATTCCATGTCAAATGCATTGACAAGTG GCTTAGCTCCCATTCATCCTGTCCTACATGTAGGCACTGCCTGATAGAGACCTGCAAGAAAATTGCTGGTTGTAGCCAAGCTAGCACATCAGGACCTACT TCACTACCAGTACAAGAAGCCATTGTCAGCATATTGCCATTAGAACCTGAAGGTTTGATAAGTAATTATAGGGGTTAA
AA sequence Show only first row Show all	>Potri.001G309600.1 pacid=42790668 polypeptide=Potri.001G309600.1.p locus=Potri.001G309600 ID=Potri.001G309600.1.v4.1 annot-version=v4.1 MSTSTSTTHQLFQGFLGDFYSRRLLLHTPLYQSSNTATPPAPGNTASSETYTSTDNSFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNLVASESAAN PSTQAANTGVKRKALKTFPIVKYSTDLNLPGLDTQCVICLSEFTPGEHVRLLPKCNHGFHVKCIDKWLSSHSSCPTCRHCLIETCKKIAGCSQASTSGPT SLPVQEAIVSILPLEPEGLISNYRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49230			RING/U-box superfamily protein...		Potri.001G309600 [exp]	0	1
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014388 [exp]	1.41	0.7270
AT1G49230			RING/U-box superfamily protein...		Potri.001G309700 [exp]	1.41	0.7946
AT3G62930			Thioredoxin superfamily protei...		Potri.002G209000 [exp]	9.48	0.7092
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Potri.002G049800 [exp]	9.59	0.6667	HMT1,SMTA.1
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Potri.003G156900 [exp]	11.31	0.7038
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Potri.005G227600 [exp]	12.64	0.7015
					Potri.001G309650 [exp]	12.96	0.7252
AT3G62930			Thioredoxin superfamily protei...		Potri.002G208700 [exp]	14.49	0.6787	PtrGrx20
					Potri.006G183466 [exp]	16.58	0.6866
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.007G139400 [exp]	17.32	0.6866

Compare expression of checked genes

Potri.001G309600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.