Plant FIBer expression Database

Potri.001G309650 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G309600
[exp]
46 / 1e-06 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1)
Potri.019G010500
[exp]
39 / 0.0004 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G309650.1 pacid=42788157 polypeptide=Potri.001G309650.1.p locus=Potri.001G309650 ID=Potri.001G309650.1.v4.1 annot-version=v4.1
ATGTCTAGCACTTCCTTTTCTCCCTCCACTCAACTCTTTCAAGATTTTCTTAAAAAATTTCCCTCAAGAAAATTGTTACAGCAAGCCCTATTTTCCCAAC
CATCAATGCTACCATCTCCTTCCCCCTCGGGAGGCACAATCCATCCCCCGTCAGAACTTTACACCAGCCATAGATATGTTCCAAATATTGTTTTAGTCAT
CTTGTTGGTCCTGTGTGCCATTATTGGCTCACTTGCTTTGTTTACAATCATTAAGAATGTGTTAGAGTGCTCAAGTTTAATAGCATCCGAGTACAATGGC
AATCTTGCTGCTAGGTTGGCCAATTATACTGCAAGGATCGAGCTAATATCTTTGAAAACTTTCTCTACTGGGCATACTCAAGGGAAATAA
AA sequence
>Potri.001G309650.1 pacid=42788157 polypeptide=Potri.001G309650.1.p locus=Potri.001G309650 ID=Potri.001G309650.1.v4.1 annot-version=v4.1
MSSTSFSPSTQLFQDFLKKFPSRKLLQQALFSQPSMLPSPSPSGGTIHPPSELYTSHRYVPNIVLVILLVLCAIIGSLALFTIIKNVLECSSLIASEYNG
NLAARLANYTARIELISLKTFSTGHTQGK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G309650
[exp]
0 1
AT1G49230 RING/U-box superfamily protein... Potri.001G309600
[exp]
12.96 0.7252
AT5G47990 THAD1, THAD, CY... THALIAN-DIOL DESATURASE, "cyto... Potri.001G270900
[exp]
14.00 0.7986
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Potri.011G026032
[exp]
49.83 0.7646
AT5G56970 ATCKX3, CKX3 cytokinin oxidase 3 (.1) Potri.007G066100
[exp]
70.28 0.7471
AT1G49230 RING/U-box superfamily protein... Potri.001G309700
[exp]
85.66 0.6893
AT5G18270 NAC ANAC087 Arabidopsis NAC domain contain... Potri.019G031600
[exp]
102.44 0.7197
AT1G71830 ATSERK1, SERK1 somatic embryogenesis receptor... Potri.001G061700
[exp]
150.56 0.6776
AT5G65030 unknown protein Potri.005G076100
[exp]
158.65 0.6820
AT4G27290 S-locus lectin protein kinase ... Potri.001G414200
[exp]
166.49 0.6923
AT4G23400 PIP1D, PIP1;5 plasma membrane intrinsic prot... Potri.009G128000
[exp]
180.22 0.6932

Potri.001G309650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.