Plant FIBer expression Database

Potri.001G309800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G18770 434 / 1e-144 Autophagy-related protein 13 (.1)
AT3G49590 147 / 2e-37 ATG13 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G010700
[exp]
812 / 0 AT3G18770 380 / 3e-124 Autophagy-related protein 13 (.1)
Potri.012G004400
[exp]
169 / 1e-44 AT3G49590 402 / 9e-133 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005812
[exp]
387 / 3e-127 AT3G18770 385 / 2e-127 Autophagy-related protein 13 (.1)
Lus10006790
[exp]
299 / 2e-93 AT3G18770 380 / 3e-125 Autophagy-related protein 13 (.1)
Lus10019097
[exp]
207 / 3e-58 AT3G49590 466 / 4e-158 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
Lus10034457
[exp]
201 / 4e-56 AT3G49590 460 / 1e-155 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0651 Mad2 PF10033 ATG13 Autophagy-related protein 13
Representative CDS sequence
>Potri.001G309800.2 pacid=42790041 polypeptide=Potri.001G309800.2.p locus=Potri.001G309800 ID=Potri.001G309800.2.v4.1 annot-version=v4.1
ATGGCATCATCACATAGTACACCCACTGAGGCTGCAAAAATGGAACAAATTATCACCGAGTTTTTTCCTAAAAGTCTTCAAATTATACTTGAGTCTAGGT
CTCCTTTCATGTCATCACGTAATTTTAGTGGTGAACAAATGGTATCCTCGTCTCCGTCCTCGTCTTTATCATCCTCCTCGAGTGTGATGCCGAGAGATAA
ATGGTTCAATTTAGCCCTTAGGGAATGCCCAGCTGCGCTTGATCTTTGGCGCCAAAGCTACTTAGAACCGATGATTGTTGATGTGATTTTGGTGCAGAGG
CCACCAGGTCGGTGGGATCCTGTGAATTATTCCCCCAAAAGGGAGATTGTTAGGAATTTTTTGTCGAAGGATCAGAGTCCATTTTATTGGAATTCTGATC
AGGAAGACTTGGGGTGTGAGGGTAAGAATGAAAAGATTTTAGAGAGGTGGGTGGTGCAGTATGAGGGTCGGAAGTCAAGGGATACTGGTTCTGGGAGTAG
GAGACTTAGCAATACCTTGCAAATATGTTATAAGAAATCGATACTACTTCTGAGGTCCTTGTATGCAACTGTTAGACTTTTACCTGCTTATAAGATTTTC
CGTGACCTCAATTCATGTGGGCAAATTCCTTCATATACACTTACACATAGGATGTCTTCCTTTGTTGAGCCCTTCACACGCAAAGAAGATTCTGAAATGC
AGCGATTTGTATTCACCCCTGTGGATACTTCCTGTGGCAGGCTTTGCCTTTCAGTGCTGTATCGCTCATCATTATCAGATGTCAGCTCTGAGTCATCAAC
TCCTATGTCCTCCTCCCAATTTATCCCTGATTATGTTGGTAGCCCATTGGCAGAACCACTGAAGAGATTCCCCTCTCTTCCTGTGTCACATGGTTCTCCA
TCATCTTTGCCCTTCTCAAGACGGCATAGTTGGAGTTATGACCTTAATAAAGCCTCGCCACCTTCATTTTGTTTCTCACCATCACCTACTTATTTAGAAA
AACATGGATCAATTTCTAATCCAAGTTCCTGCCGATTCCAACCTATGAGCTTGCCTCCTCATCCACCTGAAGTGCCTTTAGCTCATAAGAAGAATACGAG
CTTTGATGAATATTATCCTTCTCCAAACTATACACCATCTCCATCCCCATCACCACCAATCTATATTCCTGGGAGTCATGTTTCCAAGGCTCTTTTACGA
TCTGAAAGTGCACCTGTTAGCATACCTGCTGTCAAGCATGCTAGTTCTCCCCTGTTGTCCAACAAGCAAAACTTGCCCCCATCACCACCACTCAAAGCTA
CCAGATCTGGTAATCCGAAGACTGATAGAAGTACAGGTTTGGTTCACGCTGGTGCAACAGTTGAGAAGTTTTTCTCTCTCGGGAAAGATGACATTAGAAA
ATATTCCAGCGTGAAAACATCGTCCAACAGCTCTCCACAGATTTCATTGTCCAGAACTTCCAGTAGGTCATATCAGGATGATTTTGATGATTCTGAGTTT
CCTTGCGCTTTCTTTGATGTGGAGTATGATGATGTGATGGATCCAGGTCGAAGGCCCGAGTCCTTTGATAAAAAAGGCCACCAATCTGACCCGCTTGAGC
CTGGAGGTCTCTTTCCAGTTAAAAAATCCCAAGATGCAGCTGTTGGTGCTCTTGTACGCATGCTGAAGAAAGCCCCACCTTTATGCCAGGATTTCTCTGG
TTCAGTTGATTTGCCACCAGACTCCAGGTCCAAAACATGGAGCAGCAACCTCCAAGAATGCAATCCAATCTCTGGTGCATCCTTAGGTCCGCAGGCTGCT
GCTTCAGGTGTTGCGTCTTCTGGACCTGTTGCATCAAAGACAACAGCTGATGCATTTGAAGAACTCCAGGGCTACAGAGAGATGAAGAAAGACTTGTTGC
TTAGCCAAGCTGGCAGGTCCAACACTTCAGCTAATTGTGCTCCAATGTCAAAACCTACAAGCAGCAGTGGAACTGGACATTGA
AA sequence
>Potri.001G309800.2 pacid=42790041 polypeptide=Potri.001G309800.2.p locus=Potri.001G309800 ID=Potri.001G309800.2.v4.1 annot-version=v4.1
MASSHSTPTEAAKMEQIITEFFPKSLQIILESRSPFMSSRNFSGEQMVSSSPSSSLSSSSSVMPRDKWFNLALRECPAALDLWRQSYLEPMIVDVILVQR
PPGRWDPVNYSPKREIVRNFLSKDQSPFYWNSDQEDLGCEGKNEKILERWVVQYEGRKSRDTGSGSRRLSNTLQICYKKSILLLRSLYATVRLLPAYKIF
RDLNSCGQIPSYTLTHRMSSFVEPFTRKEDSEMQRFVFTPVDTSCGRLCLSVLYRSSLSDVSSESSTPMSSSQFIPDYVGSPLAEPLKRFPSLPVSHGSP
SSLPFSRRHSWSYDLNKASPPSFCFSPSPTYLEKHGSISNPSSCRFQPMSLPPHPPEVPLAHKKNTSFDEYYPSPNYTPSPSPSPPIYIPGSHVSKALLR
SESAPVSIPAVKHASSPLLSNKQNLPPSPPLKATRSGNPKTDRSTGLVHAGATVEKFFSLGKDDIRKYSSVKTSSNSSPQISLSRTSSRSYQDDFDDSEF
PCAFFDVEYDDVMDPGRRPESFDKKGHQSDPLEPGGLFPVKKSQDAAVGALVRMLKKAPPLCQDFSGSVDLPPDSRSKTWSSNLQECNPISGASLGPQAA
ASGVASSGPVASKTTADAFEELQGYREMKKDLLLSQAGRSNTSANCAPMSKPTSSSGTGH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G18770 Autophagy-related protein 13 (... Potri.001G309800
[exp]
0 1
AT3G01990 ACR6 ACT domain repeat 6 (.1) Potri.001G327000
[exp]
1.00 0.9265
AT5G51910 TCP TCP19 TCP family transcription facto... Potri.012G135900
[exp]
1.41 0.9263
AT2G41870 Remorin family protein (.1) Potri.014G058900
[exp]
3.00 0.9067
AT5G20300 Toc90 translocon at the outer envelo... Potri.018G123300
[exp]
3.46 0.9210
AT1G55000 peptidoglycan-binding LysM dom... Potri.005G032100
[exp]
3.87 0.9222
AT4G24320 Ubiquitin carboxyl-terminal hy... Potri.004G223200
[exp]
5.47 0.8966
AT3G07565 Protein of unknown function (D... Potri.014G197300
[exp]
8.94 0.9160
AT4G03510 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) Potri.019G100800
[exp]
13.03 0.9200 Pt-RMA1.1
AT2G37678 PAT3, FRY1, FHY... PHYTOCHROME A SIGNAL TRANSDUCT... Potri.006G087300
[exp]
13.52 0.8718
AT5G02860 Pentatricopeptide repeat (PPR)... Potri.009G092100
[exp]
13.63 0.9180

Potri.001G309800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.