Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14095 110 / 1e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G050000 [exp] 199 / 3e-65 AT2G14095 105 / 6e-28 unknown protein Potri.002G101600 [exp] 51 / 9e-08 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035649 [exp] 99 / 3e-25 AT2G14095 114 / 1e-30 unknown protein Lus10010746 [exp] 98 / 1e-24 AT2G14095 108 / 2e-28 unknown protein Lus10025500 [exp] 40 / 0.0004 AT2G14095 64 / 7e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G310100.1 pacid=42791324 polypeptide=Potri.001G310100.1.p locus=Potri.001G310100 ID=Potri.001G310100.1.v4.1 annot-version=v4.1 ATGTCGGCTAAAAGGTCTTGGACTTCTTACAATCTACGAAGTTTTCTCGAACTAATTCATCGTTACAGAGCCAGCTCCAGCAATGTTTCTACAGTGTCCA AGATCGGACAGGGTTTATCAGTTCATAAAGGATTGCAGTTGATTAATGCCAATAGCCAAGAAGGGAGACGATTCGATTCCAATATGATGAAGAGTGACAA GGTTGCCCCAGCGCCGGTTCCAAATCCTCCCGGAAGTAACTTCCCCCGTTGGGCAAAATGGATCTTGGGAACTATACTATCCATCTTACTACCTTTTTGG CAGCAAGAATGGAAGAAGCTCAGAAGGATAGAAGGAGAATCGGAAATTATTGTTGAAGAGGTTGAACATGTAGCAGAGGTGGTAGAAAAGGTGGCGACTG TGGCGGAGAAGGTATCAGAAGAGGTGGCCGAAGTGCTGCCTGAAAACGGAAAACTAAAGGAAACAGCTTTGTTGATGGAAGCCGTTTCAAAAGCAACTGC CCATGATGCTAAACTAACACAAGACTTTATTCACAAGGTGGATGCTGTACGGCATGACATTGATGACTTAGAGACGATGGTTGAACCTGTAATAGACAAG CTTGTGCAGCAAAACTCTCAAGGAAAGTGA
AA sequence Show only first row Show all	>Potri.001G310100.1 pacid=42791324 polypeptide=Potri.001G310100.1.p locus=Potri.001G310100 ID=Potri.001G310100.1.v4.1 annot-version=v4.1 MSAKRSWTSYNLRSFLELIHRYRASSSNVSTVSKIGQGLSVHKGLQLINANSQEGRRFDSNMMKSDKVAPAPVPNPPGSNFPRWAKWILGTILSILLPFW QQEWKKLRRIEGESEIIVEEVEHVAEVVEKVATVAEKVSEEVAEVLPENGKLKETALLMEAVSKATAHDAKLTQDFIHKVDAVRHDIDDLETMVEPVIDK LVQQNSQGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14095			unknown protein		Potri.001G310100 [exp]	0	1
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Potri.010G027600 [exp]	1.00	0.8972
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G096100 [exp]	4.24	0.7728
AT3G61490			Pectin lyase-like superfamily ...		Potri.003G131700 [exp]	5.29	0.8566
AT4G22680	MYB	ATMYB85	myb domain protein 85 (.1)		Potri.012G127700 [exp]	5.47	0.8126
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Potri.017G088700 [exp]	6.48	0.7797
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Potri.004G215400 [exp]	7.93	0.7772
AT2G45420	AS2	LBD18, ASL20	LOB domain-containing protein ...		Potri.002G149000 [exp]	8.48	0.8016
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.014G000800 [exp]	8.94	0.7763
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Potri.016G024500 [exp]	9.74	0.7836
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Potri.002G151900 [exp]	15.16	0.7703

Compare expression of checked genes

Potri.001G310100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.