Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01020 80 / 4e-19 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) AT5G10370 75 / 3e-17 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G050100 [exp] 136 / 6e-39 AT4G01020 1719 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Potri.005G071500 [exp] 81 / 2e-19 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012749 [exp] 78 / 2e-18 AT5G10370 208 / 1e-15 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Lus10023162 [exp] 72 / 3e-16 AT5G10370 1876 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G310200.3 pacid=42792511 polypeptide=Potri.001G310200.3.p locus=Potri.001G310200 ID=Potri.001G310200.3.v4.1 annot-version=v4.1 ATGAATGGAAAGACAGTAAATCATGGTAGCCTAACCCCAATTGTTCTGCAGCTTCTTTCCTCCAGAGATGGCATCATGCTCATGAAGTCAGTGCAGCAAC AAATGGGAACTTGCATTCTATTTGATAGGCAGAACCTCACCATCAGGATCTTTGGCCCAGAGAACCAAGCTGCCCTTACGGAACAGAAGTTAGTAGCATC TCTTCTAGCATTCCGTGATAAGCAGCAAACAGATATCCGTCTTTGA
AA sequence Show only first row Show all	>Potri.001G310200.3 pacid=42792511 polypeptide=Potri.001G310200.3.p locus=Potri.001G310200 ID=Potri.001G310200.3.v4.1 annot-version=v4.1 MNGKTVNHGSLTPIVLQLLSSRDGIMLMKSVQQQMGTCILFDRQNLTIRIFGPENQAALTEQKLVASLLAFRDKQQTDIRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01020			helicase domain-containing pro...		Potri.001G310200 [exp]	0	1
AT5G53940			Yippee family putative zinc-bi...		Potri.011G115700 [exp]	33.16	0.6642
AT2G01060	GARP		myb-like HTH transcriptional r...		Potri.006G000800 [exp]	37.81	0.6723
AT4G36550			ARM repeat superfamily protein...		Potri.005G122100 [exp]	53.36	0.6686
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Potri.019G033800 [exp]	100.87	0.6092
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019601 [exp]	101.33	0.6161
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Potri.012G064100 [exp]	106.56	0.6527
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Potri.015G108900 [exp]	131.15	0.6109
					Potri.018G024000 [exp]	209.42	0.6075
AT3G63220			Galactose oxidase/kelch repeat...		Potri.005G211700 [exp]	240.93	0.6020

Compare expression of checked genes

Potri.001G310200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.