Plant FIBer expression Database

Potri.001G310500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64300 762 / 0 ATGCH, ATRIBA1, RFD1 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
AT5G59750 581 / 0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
AT2G22450 574 / 0 riboflavin biosynthesis protein, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G050400
[exp]
922 / 0 AT5G64300 714 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Potri.007G097300
[exp]
767 / 0 AT5G64300 773 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Potri.005G071600
[exp]
657 / 0 AT5G64300 647 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Potri.001G234900
[exp]
593 / 0 AT5G59750 770 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012751
[exp]
736 / 0 AT5G64300 755 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Lus10025733
[exp]
735 / 0 AT5G64300 757 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Lus10035929
[exp]
733 / 0 AT5G64300 763 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Lus10023161
[exp]
720 / 0 AT5G64300 744 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Lus10040865
[exp]
568 / 0 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Lus10006669
[exp]
474 / 1e-163 AT5G64300 513 / 5e-179 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Lus10007013
[exp]
467 / 1e-158 AT5G64300 506 / 4e-174 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Lus10005882
[exp]
444 / 1e-151 AT5G59750 502 / 2e-175 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00925 GTP_cyclohydro2 GTP cyclohydrolase II
PF00926 DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase
Representative CDS sequence
>Potri.001G310500.1 pacid=42789582 polypeptide=Potri.001G310500.1.p locus=Potri.001G310500 ID=Potri.001G310500.1.v4.1 annot-version=v4.1
ATGGCTTCTTTTAATGTTTCTTCTTACCCTTCAACTACCACAAGAGCAGCTCTCTCTGGCTCCCAGTCATGCAGAAATCTCAAATTGTTCAATGGATTAC
ATGGCGTGAATTCATTTTGTGCAAGTGGGAATGCATTGAATTTGACATTGATTCGTCTGGATGGTTGTAAATCATCTTTTGGTATTAAGGGTGCTGGAAA
AACTCGAGCCACGCTGATATCTGGTGATGGCCTGCTGTCCTATTCCAATGGCAATGGTGTTGCAGCAAAGAGTACTCTTCTTGATAATGGTTCAGTTGGG
ACCTTATCAGCTGATACTGCTTCCATCACTAATGATTTTGTGGTTGGTAATGATGACCATGAATTGGATCGCCCCACAGAAGGATTTTCTTCCATCCCCG
ATGCCATTGAAGATATTCGCCAAGGAAAGATTGTAGTGGTTGTAGACGATGAAGACAGAGAAAATGAAGGGGATCTCATTATGGCAGCAGAGTTGGCAAC
TCCTGAAGCTATGGCATTTATTGTGAAGCATGGCACTGGAATAGTTTGTGTGAGCATGCAAGGGGAAGATCTGGACAGGTTACAGCTCCCTTTGATGGTT
AGGCAAAACGAAAATGATGAAAAACTTCGTACAGCATTCACTGTGACAGTGGATGCAAAACATGGTACAACCACTGGGGTTTCAGCTAATGATAGGGCAA
CAACAATGTTAGCTCTAGCATCCAAAGATTCAAAACCCGATGATTTCAACCGCCCGGGCCACATTTTTCCATTGAGGTATAGGGAGGGTGGAGTTCTGAA
AAGAGCTGGACATACAGAAGCTTCTGTTGATCTTGTCGTTCTAGCTGGATTGGACCCTGTTGCAGTTCTGTGTGAGGTTGTAGATGATGATGGCTCCATG
GCTAGATTACCAAAGCTCCGTCAATTTGCAGAGAGGGAGAACTTGAAAATTATATCTATAGCTGATTTAATCAGGTATAGAAGGAAGACTGATAAATTGG
TAGATCGTTCTTCTGCTGCTCAGATACCAACAATGTGGGGACCGTTCACAGCTTACTGTTATAGGTCAATATTAGATGGCATTGAGCATATTGCAATGGT
TAAGGGTGACATTGGAGATGGGCAGGATGTTCTTGTGAGGGTACATTCAGAATGCCTCACAGGAGATATATTTGGCTCTGCTAGATGTGATTGTGGGGAT
CAGCTGGCACTTGCAATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTGTTGGTCTATCTCCGTGGGCATGAAGGGCGTGGCATTGGTTTAGGTCATAAAC
TTCGTGCATACAACCTCCAAGATGATGGACGTGATACCGTGGAAGCAAATGAGGAGCTGGGGCTTCCTGTTGATTCACGAGAATATGGCATTGGCGCCCA
GATGTTGCGTGATCTGGGAGTCCGAACAATGAAGTTGATGACGAACAACCCTGCAAAGTACATCGGGCTCAAAGGTTATGGATTGGCAGTTTCAGGTAGA
GTTCCGCTATTGACTCCCATCACAAAAGACAACAAGAGATATCTGGAAACCAAACGTGCTAAAATGGGGCATATCTATGGTGCTGAATTCAATGGCCACT
TAAGCAACCTCATCAATAGCAATGGTAATGGTAAATCCGGTGTTGAAACTCCCATCTGA
AA sequence
>Potri.001G310500.1 pacid=42789582 polypeptide=Potri.001G310500.1.p locus=Potri.001G310500 ID=Potri.001G310500.1.v4.1 annot-version=v4.1
MASFNVSSYPSTTTRAALSGSQSCRNLKLFNGLHGVNSFCASGNALNLTLIRLDGCKSSFGIKGAGKTRATLISGDGLLSYSNGNGVAAKSTLLDNGSVG
TLSADTASITNDFVVGNDDHELDRPTEGFSSIPDAIEDIRQGKIVVVVDDEDRENEGDLIMAAELATPEAMAFIVKHGTGIVCVSMQGEDLDRLQLPLMV
RQNENDEKLRTAFTVTVDAKHGTTTGVSANDRATTMLALASKDSKPDDFNRPGHIFPLRYREGGVLKRAGHTEASVDLVVLAGLDPVAVLCEVVDDDGSM
ARLPKLRQFAERENLKIISIADLIRYRRKTDKLVDRSSAAQIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGD
QLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPAKYIGLKGYGLAVSGR
VPLLTPITKDNKRYLETKRAKMGHIYGAEFNGHLSNLINSNGNGKSGVETPI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G64300 ATGCH, ATRIBA1,... RED FLUORESCENT IN DARKNESS 1,... Potri.001G310500
[exp]
0 1
AT3G19830 NTMCTYPE5.2 ,NT... Calcium-dependent lipid-bindin... Potri.008G085000
[exp]
2.44 0.8749
AT5G66210 CPK28 calcium-dependent protein kina... Potri.005G113600
[exp]
2.82 0.8795 CPK18
AT3G54020 AtIPCS1 Arabidopsis Inositol phosphory... Potri.016G105700
[exp]
6.00 0.8278
AT5G26030 FC1, FC-I, ATFC... ferrochelatase 1 (.1.2) Potri.006G232100
[exp]
7.48 0.7903
AT1G20980 SBP ATSPL14, SPL1R2... squamosa promoter binding prot... Potri.005G258700
[exp]
8.83 0.8257
AT3G45640 ATMAPK3, ATMPK3 mitogen-activated protein kina... Potri.009G066100
[exp]
9.48 0.8780 Pt-MPK3.2
AT2G43320 S-adenosyl-L-methionine-depend... Potri.007G127300
[exp]
10.09 0.7924
AT5G21990 OEP61, TPR7 tetratricopeptide repeat 7, ou... Potri.009G151700
[exp]
13.19 0.8515
AT5G57580 Calmodulin-binding protein (.1... Potri.011G043300
[exp]
13.71 0.8544 CBP60.12
AT1G05340 unknown protein Potri.006G021600
[exp]
14.24 0.8443

Potri.001G310500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.