Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64290 653 / 0 DCT, DIT2.1 dicarboxylate transport 2.1 (.1) AT5G64280 545 / 0 DIT2.2 dicarboxylate transporter 2.2 (.1) AT5G12860 345 / 7e-112 DIT1 dicarboxylate transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G050500 [exp] 766 / 0 AT5G64290 707 / 0.0 dicarboxylate transport 2.1 (.1) Potri.009G053800 [exp] 351 / 3e-114 AT5G12860 801 / 0.0 dicarboxylate transporter 1 (.1.2) Potri.001G258600 [exp] 346 / 3e-112 AT5G12860 777 / 0.0 dicarboxylate transporter 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003967 [exp] 643 / 0 AT5G64290 842 / 0.0 dicarboxylate transport 2.1 (.1) Lus10002560 [exp] 352 / 1e-114 AT5G12860 841 / 0.0 dicarboxylate transporter 1 (.1.2) Lus10027368 [exp] 350 / 5e-114 AT5G12860 838 / 0.0 dicarboxylate transporter 1 (.1.2) Lus10023779 [exp] 229 / 9e-71 AT5G64290 326 / 1e-108 dicarboxylate transport 2.1 (.1) Lus10023778 [exp] 218 / 2e-68 AT5G64290 256 / 7e-84 dicarboxylate transport 2.1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [poplar] [flax] IT PF00939 [poplar] [flax] Na_sulph_symp Sodium:sulfate symporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.001G310600.1 pacid=42791865 polypeptide=Potri.001G310600.1.p locus=Potri.001G310600 ID=Potri.001G310600.1.v4.1 annot-version=v4.1 ATGGAGAGCTTTGCCCTCCACTCTCTCTCCACCACAACAACAACAACCACCACCTTCTCCACCTCTCTCTACACCCGCATTTCCCTACTCCACAGATTAC CTAAACCTCTCTCCATTACCAAATCCTCACCATCCATTCCCTTACTCTCCACCATCAGATCATCCACTCAAAAACCTCTCTTTTTCTCTGCATTTCACAC TAAAAACAAAACCTTCGATTCGAAATTTAGAATTCTCGCATTGGACACAAAATCCAGTGACAACCCGTTATCAGACTCGTCAGAAAAACCAACCCCACCT CAAAAAGGAGCAAAATTGATACCCCTTTTGATATCTGTCTCTATAGGCTTGATTGTAAGGTTTGCTGTGCCTAAACCAATAGGAATTACCCCACAAGCCT GGCAATTGTTGTCTATTTTCCTTTCTACTATTGCTGGTCTTATTTTAAGTCCTTTGCCAGTTGCGGCATGGGCTTTTTTGGGTTTAACAACTTTACTTGT TACTAGAACTTTGTCATTTACGACTGCTTTTAGTGCTTTTACTAATGAAGTTATTTGGTTGATTGTCATTTCTTTCTTTTTTGCTCGCGGTTTTGTTAAG ACTGGATTAGGTGATAGGATTGCTACTTACTTTGTTAAGTGGCTAGGGAAGAGTACTTTAGGATTGTCTTATGGTTTGACACTCAGTGAGGTTCTTATTG CGCCTGCGATGCCTAGCACTACTGCTAGGGCTGGTGGGGTTTTTTTGCCTATTATCAAGTCATTGTCATTGTCAGCAGGGAGTAAGCCTGGCGATTCCTC TTCGGCAAAGCTCGGTTCTTATTTAATCCAGTCACAAATGCAGTGTGCTGCCAGCTCCAGCTCTCTTTTTCTAACAGCGGCAGCTCAAAATTTGCTGTGT TTTAAATTAGCCGGGGAACTTGGGGTGATGATTCCAAACCCTTGGATTTCTTGGTTGAAGGCTGCTAGCTTGCCAGCATTGACTTCTCTTCTAGTAACTC CACTCGTCTTATATAAGCTCTACCCTCCTGAAACCAAAGACACTCCAGATGCCCCTGCAGTGGCTGCAAAGAAACTGGAGACTATGGGTTCTGTCACAAA AAATGAATGGACCATGGTTGGTACAATGCTTCTTGCAGTTTCTTTGTGGGTATTTGGAGATGCTATCGGAATACCAAGTGTAGTCGCTGCAATGATTGGC TTATCAATACTGCTTCTGCTGGGAGTTCTTGATTGGGATGACTGCTTAAGTGAAAAATCGGCATGGGATACCTTGGCTTGGTTTGCAGTTCTAGTGGGAA TGGCGAGCCAATTAACAAACCTCGGTGTTATATCCTGGATGTCTGGTTGTGTATCCAAGAACCTTCAATCTCTCTCTTTGAGCTGGCCTGCTGCGTTTGG GGTTCTTCAGGCATCTTACTTCTTTATCCATTACCTATTTGCTGGTCAAATTGGTCATGTTGGTGCTTTATACTCTGCATTTCTCGCAATGCATTTGGCA GCTGGGGTGCCCGCTACATTGGCAGCTTTGGCTTTAGCTTACAATACAAATCTTTTCGGTGCTCTTACCCATTATAGCAGCGGTCAATCTGCTGTATACT ATGGAGCTGGTTATATGGACCTTCCTGATGTGTTCAAGCTCGGCTTTGTGATGGCCCTTATTAATGCCATCATCTGGGGAGTTACTGGAACTTTCTGGTG GAAATTTCTAGGCCTCTACTGA
AA sequence Show only first row Show all	>Potri.001G310600.1 pacid=42791865 polypeptide=Potri.001G310600.1.p locus=Potri.001G310600 ID=Potri.001G310600.1.v4.1 annot-version=v4.1 MESFALHSLSTTTTTTTTFSTSLYTRISLLHRLPKPLSITKSSPSIPLLSTIRSSTQKPLFFSAFHTKNKTFDSKFRILALDTKSSDNPLSDSSEKPTPP QKGAKLIPLLISVSIGLIVRFAVPKPIGITPQAWQLLSIFLSTIAGLILSPLPVAAWAFLGLTTLLVTRTLSFTTAFSAFTNEVIWLIVISFFFARGFVK TGLGDRIATYFVKWLGKSTLGLSYGLTLSEVLIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSAKLGSYLIQSQMQCAASSSSLFLTAAAQNLLC FKLAGELGVMIPNPWISWLKAASLPALTSLLVTPLVLYKLYPPETKDTPDAPAVAAKKLETMGSVTKNEWTMVGTMLLAVSLWVFGDAIGIPSVVAAMIG LSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMASQLTNLGVISWMSGCVSKNLQSLSLSWPAAFGVLQASYFFIHYLFAGQIGHVGALYSAFLAMHLA AGVPATLAALALAYNTNLFGALTHYSSGQSAVYYGAGYMDLPDVFKLGFVMALINAIIWGVTGTFWWKFLGLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Potri.001G310600 [exp]	0	1
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.016G114300 [exp]	5.65	0.9963
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Potri.005G153600 [exp]	6.92	0.9966	Pt-CER2.1
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.012G047700 [exp]	7.34	0.9961
AT5G10770			Eukaryotic aspartyl protease f...		Potri.006G232500 [exp]	7.74	0.9949
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.013G052800 [exp]	8.36	0.9929
AT5G18020			SAUR-like auxin-responsive pro...		Potri.004G165200 [exp]	9.00	0.9954
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.013G052900 [exp]	9.16	0.9940
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Potri.003G065266 [exp]	9.32	0.9964
AT5G10770			Eukaryotic aspartyl protease f...		Potri.006G232400 [exp]	10.48	0.9938
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Potri.002G189300 [exp]	13.19	0.9931

Compare expression of checked genes

Potri.001G310600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.