Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02220 505 / 6e-167 ATPSKR1 phytosulfokin receptor 1 (.1) AT5G53890 378 / 4e-118 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT1G17240 305 / 1e-93 AtRLP2 receptor like protein 2 (.1) AT1G17250 301 / 7e-92 AtRLP3 receptor like protein 3 (.1) AT1G72300 295 / 4e-87 Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 197 / 6e-53 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT3G28040 193 / 1e-51 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 189 / 4e-50 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G01890 188 / 6e-50 Leucine-rich receptor-like protein kinase family protein (.1) AT2G25790 185 / 6e-49 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G050700 [exp] 799 / 0 AT2G02220 540 / 1e-180 phytosulfokin receptor 1 (.1) Potri.017G050600 [exp] 596 / 0 AT2G02220 407 / 2e-129 phytosulfokin receptor 1 (.1) Potri.008G144700 [exp] 511 / 5e-169 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1) Potri.010G097700 [exp] 495 / 6e-163 AT2G02220 1187 / 0.0 phytosulfokin receptor 1 (.1) Potri.011G116900 [exp] 379 / 3e-118 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.001G398500 [exp] 378 / 4e-118 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.003G074000 [exp] 318 / 1e-95 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G161000 [exp] 301 / 3e-89 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.006G237400 [exp] 201 / 3e-54 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005403 [exp] 366 / 1e-113 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10009213 [exp] 365 / 3e-113 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10016395 [exp] 311 / 9e-93 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019722 [exp] 303 / 4e-90 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000814 [exp] 196 / 2e-52 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10012877 [exp] 191 / 5e-51 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027951 [exp] 190 / 2e-50 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10030526 [exp] 189 / 4e-50 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039030 [exp] 182 / 6e-48 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10023323 [exp] 182 / 8e-48 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G310700.1 pacid=42788606 polypeptide=Potri.001G310700.1.p locus=Potri.001G310700 ID=Potri.001G310700.1.v4.1 annot-version=v4.1 ATGCAATACTCGTACCTTTGTTTCACCTTCATCTTGTTGACAATCAGTTTCAAGGCTCCCTTCACAAGATCTGAGAATTTCTCATGCAATTCAAATGATC TTAGATCCTTAACTAGCTTCTCCAGTTCCATAGACTATGGGCTTGATTGGAATACGTCAGACTCAAATTGTTGCACTTGGATAGGAGTCACCTGTGACAA TTCCACTGTTCCGAGTAAAAGGGTAGTCAGGTTAGAACTTGGGAGCAAAAGACTCAAAGGAAAAATTAGCGAGTCCTTGGCAGGTTTGGATCAGCTGAGT ATACTGAACCTCTCACAGAATTTCCTTCATGGATACCTTCCAGCCAGATTACTCCACCTGCAGAATCTTGAGATCATTGACTCGAGCAATAATGATCTTG TCGGTCCATTACCAGGAGGTAGCAATTTATCCTCGATCAGGTATGTTGACATTTCAAGGAACAATTTTAACGGTTCTGTCGATGCAGCACTTTGTGAGAG CTCATCATATATTCACACGCTCAATCTTGGAAACAACTATTTCACTGGTGAAGTTCCAGCAAACTTTGGAAGGTGTTCTTCTCTGCAGCAACTCTTTCTT AATGACAATCACCTCTCAGGAAATCTCCCCAAAAGCCTCTGGCAACTGCGAAATCTTCGTATATTGCACCTTCAGAATAATTTAGTTTCTGGGCCACTAA ATGATGAGATTGGTAAACTTTCCAACCTTGTGGAATTGGATATCTCCTCCAATAAGTTTTCTGGAATTCTTCCAGATGTTTTTGAGAGGCTTAAGCTTGA GAATTTCTTCGCCGGCTCAAACAACTTCAGTGGCCATTTGCCCATGTCATTGGTAAATTCTCCATATATTGTAATTCTGAATTTGAACAACAACACCCTT AATGGTCCAATCAATCTCAATTGTTCTGCAATGGTTCATCTCACCTCTGTCGATCTTGGTTCTAATAATTTCCATGGTCCGCTGCCTGATGTTATATCCT CTTGCCAGAGACTGACCAATCTGAATCTTGCTCGTAATAACCTTGGTGGTGAAGTTCCTTTTGCGTTCAAGAATCTCCAAGCCCTAAGATCCCTCTCACT CTCAAACAACAGCCTTGTTAACATATCATCAGCCCTAGCAATTCTACAACATTGCAGAAACTTAACTTCACTGTTCCTTAGTTTTAACTTTCACGGTGAA CAAATGCCCAGAAATGTGAATTTTCACTTCAGGAACCTCAGGGCACTTGCTATTCCTTATTGTGAACTTACAGGTTCCATTCCAACATGGCTGAGTGGCA GCAATATGTTGCAACTTTTGGATTTGTCATGGAATAGACTGTATGGAACTATTCCCTTCTGGTTCCATGAGTTCAAGTATCTCTTTTACATGGATCTGTC GAACAATTCTTTCACTGGTGAAATACCTGAGAGCTTGACAGAGCTACAGGGCCTGATCAACATGAAAATATCACCAGGACTTTCTTTAGGCTTCCCACTC TTCTCGTTCGTAGCAGATGGTGCAAAACTCAAGTATAAAGGTATTTGGGGCTTTCGACCAACTTTGGACTTGAGTTACAATAAGCTCACAGGACCCTTAT GGCCAGGTTTTGGAAATTTGAAAGAACTCCACGTTCTGAAGCTGAAAGAAAATCATCTCTCAGGAACCATTCCCGATAGTTTCTCAGGCATGACAAGCTT GGAAGTTTTGGACTTATCCTATAATGATTTATCAGGAGAAATACCTCTCTCACTGGAAAAGCTCAGTTTTCTGTCGAAGTTCAGCATTGCATACAATCAA TTGCAAGGAGATATCCCTACAGGAGGCCAGTTCCTGACATTTCCACCTTCAAGCTTTGAGGGAAATAAAGGTCTGCGTGGACAACAGCTTACTCCTTTTC AGCCTCATCAGGCTCCTCATGATGTTCAGCTGGCTGATGAAGAAATGACTATAATCGGTTTGCAATTTGGACTTGGAGTTATGACTGGGTTCCTTTTCAC TGTCACCTTATGCTTCGCATCCGGCTGGGTGTTTGCAAAGACATGA
AA sequence Show only first row Show all	>Potri.001G310700.1 pacid=42788606 polypeptide=Potri.001G310700.1.p locus=Potri.001G310700 ID=Potri.001G310700.1.v4.1 annot-version=v4.1 MQYSYLCFTFILLTISFKAPFTRSENFSCNSNDLRSLTSFSSSIDYGLDWNTSDSNCCTWIGVTCDNSTVPSKRVVRLELGSKRLKGKISESLAGLDQLS ILNLSQNFLHGYLPARLLHLQNLEIIDSSNNDLVGPLPGGSNLSSIRYVDISRNNFNGSVDAALCESSSYIHTLNLGNNYFTGEVPANFGRCSSLQQLFL NDNHLSGNLPKSLWQLRNLRILHLQNNLVSGPLNDEIGKLSNLVELDISSNKFSGILPDVFERLKLENFFAGSNNFSGHLPMSLVNSPYIVILNLNNNTL NGPINLNCSAMVHLTSVDLGSNNFHGPLPDVISSCQRLTNLNLARNNLGGEVPFAFKNLQALRSLSLSNNSLVNISSALAILQHCRNLTSLFLSFNFHGE QMPRNVNFHFRNLRALAIPYCELTGSIPTWLSGSNMLQLLDLSWNRLYGTIPFWFHEFKYLFYMDLSNNSFTGEIPESLTELQGLINMKISPGLSLGFPL FSFVADGAKLKYKGIWGFRPTLDLSYNKLTGPLWPGFGNLKELHVLKLKENHLSGTIPDSFSGMTSLEVLDLSYNDLSGEIPLSLEKLSFLSKFSIAYNQ LQGDIPTGGQFLTFPPSSFEGNKGLRGQQLTPFQPHQAPHDVQLADEEMTIIGLQFGLGVMTGFLFTVTLCFASGWVFAKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.001G310700 [exp]	0	1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G177900 [exp]	7.68	0.7826
AT1G28710			Nucleotide-diphospho-sugar tra...		Potri.002G139800 [exp]	8.00	0.7558
AT4G24290			MAC/Perforin domain-containing...		Potri.001G305600 [exp]	13.41	0.7354
AT5G67550			unknown protein		Potri.007G132601 [exp]	19.62	0.6643
AT4G26080		AtABI1, ABI1	ABA INSENSITIVE 1, Protein pho...		Potri.006G164632 [exp]	29.73	0.7205
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Potri.007G031500 [exp]	30.70	0.6881
AT3G27310		PUX1	plant UBX domain-containing pr...		Potri.001G337533 [exp]	42.35	0.7033
AT2G41640			Glycosyltransferase family 61 ...		Potri.006G048500 [exp]	43.81	0.7009
					Potri.006G183101 [exp]	45.00	0.6984
AT5G63970			Copine (Calcium-dependent phos...		Potri.007G103700 [exp]	46.66	0.7044

Compare expression of checked genes

Potri.001G310700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.