Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64270 2001 / 0 splicing factor, putative (.1) AT1G25490 48 / 4e-05 REGA, PR65, EER1, ATBBETABETA, RCN1 ROOTS CURL IN NPA, ENHANCED ETHYLENE RESPONSE 1, ARM repeat superfamily protein (.1) AT1G13320 48 / 6e-05 PR65, PDF2, PP2AA3 protein phosphatase 2A subunit A3 (.1.2.3) AT3G25800 47 / 6e-05 PP2AA2, PR65, PDF1 protein phosphatase 2A subunit A2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G050800 [exp] 2275 / 0 AT5G64270 2020 / 0.0 splicing factor, putative (.1) Potri.012G062700 [exp] 45 / 0.0004 AT3G25800 1116 / 0.0 protein phosphatase 2A subunit A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033347 [exp] 2092 / 0 AT5G64270 2168 / 0.0 splicing factor, putative (.1) Lus10034803 [exp] 1925 / 0 AT5G64270 1985 / 0.0 splicing factor, putative (.1) Lus10035038 [exp] 45 / 0.0003 AT3G25800 1134 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10021695 [exp] 45 / 0.0003 AT3G25800 1129 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10034299 [exp] 45 / 0.0004 AT3G25800 1102 / 0.0 protein phosphatase 2A subunit A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0462 [poplar] [flax] TPA-repeat PF08920 [poplar] [flax] SF3b1 Splicing factor 3B subunit 1
Representative CDS sequence Show only first row Show all	>Potri.001G310900.1 pacid=42789466 polypeptide=Potri.001G310900.1.p locus=Potri.001G310900 ID=Potri.001G310900.1.v4.1 annot-version=v4.1 ATGGATCCTGAAATCGCCAAAACCCAAGAAGAACGCAAAAAAATGGAACAACAACTTGCCTCTTTAACCTCTTTAACCTTCGATCGTGACTTGTATGGTG GAGTCGACCGTGAGGCTTATGAAACATCGATTCCAGCTACAGATGATGAAGAACCCGACATGGGTCTTAACGAGGTTGCTCAGAGACTCGCTTCGTATAC TGCACCGAAATCAGTTCTTAAAGAAATGCCTCGTGGCGGTGATGATAGCGAAGAAACTGATGGGTTTAGGAAGCCATCGAGAATTATTGATCGCGAGGAT GATTATAGGAGGAGGAGATTGGATAGAATTATTTCGCCGGAGAGGCATGATCCTTTTGCTGCCGGTGAGAAGACGCCGGATCCCAGTGTGAGGACTTATT CGGATGTTATGATGGAAGAGTCTTTGAAAAAGCAAAAGGAGGAGTTGTTGAGGAAGATTGCCAACAAAAAGAAGGAAGAAGAGGAGGCGAGGGCTGGAAA GGAGGAAAATGTGGCGAGTACAGTGCCTAAAAGGAGCAATAGGTGGGATCAATCGAAGGAGGATGATGGGAAAGTGGTTAAGAAGGCGAAGACAGGTTCG GATTGGGATTTACCTGATGCTACACCGGGAATTGGGAGATGGGATGCGACACCTACTCCGGGGAGGATTGGAGATGCTACACCTGGTGCTGGGAGGAGGA ATAGGTGGGATGAGACTCCTACACCGGGGAGAGTGGTTGATTCAGATGCTACTCCTGCAGGTGGGGTTACGCCAGGGGCTACTCCTGCTGGTGTTGCTTG GGACGCTACTCCTAAAGGAATGGTTACCCCTACCCCGAAAAGGCAAAAGTCTCGTTGGGATGAGACTCCTGCTAGTATGGATAGTGCGACTCCTGCTCTT GGGGCGGTTACTCCTAGTCTTGGTGGTGTGACTCCTGGACCTACTCCTCTTGGTGCAATTGATATGGCTACTCCAACTCCGAATGCACTTGCCATGCGCG GGGCAATAACGCCTGAGCAGTATAATCTGCTGAGGTGGGAGAAGGATATTGAGGAGAGGAATAGGCCATTGACTGATGAGGAGTTGGATGCTATGTTTCC TCAAGAAGGGTACAAGATTTTGGAGCCACCGGCTTCTTATGTGCCTATTAGGACACCAGCAAGGAAGTTGTTGGCTACCCCAACACCAATGGGCACTCCT CTTTATTCTATTCCTGATGAGAACAGAGGGCAACAGTTTGATCTAGGGCAGGAGCCTCCTGCTGGGTTGCCATTTATGAAACCTGAGGATTATCAGTATT TTGGTGCTTTGTTGAATGAGGAAGATGAGGAGGAGTTGTCCCCAGAGGAGCAGAAAGAGAGGAAGATTATGAAACTTTTACTGAAAGTGAAGAACGGGAC ACCTCCACAGAGGAAGACTGCTTTGAGGCAGTTGACGGATAAGGCTAGAGAGTTTGGTGCTGGGCCGTTGTTCAACAGAATTTTGCCACTGCTTATGCAG CCTACCTTGGAGGATCAGGAGAGGCATCTTCTGGTCAAGGTAATTGATAGGGTTTTGTATAAATTGGATGAGTTAGTTAGGCCTTATGTTCATAAGATTC TTGTTGTTATTGAACCACTCTTGATTGATGAGGATTATTATGCCCGTGTGGAAGGGAGAGAAATTATTTCTAATTTGAGTAAAGCAGCTGGTTTGGCCAC TATGATTGCTGCTATGCGTCCTGATATTGATAATATTGATGAGTATGTTAGGAACACAACTGCAAGAGCTTTCAGCGTTGTCGCTTCAGCTCTCGGGATT CCTGCATTGTTGCCCTTCTTGAAAGCTGTGTGTCAGAGTAAGAAATCCTGGCAAGCTCGTCATACTGGAATCAAAATTGTTCAACAGATTGCTATTTTGA TTGGCTGTGCTGTTCTTCCCCATTTGAGGTCTCTTGTGGAAATCATAGAACATGGTCTGAATGATGAGAATCAGAAGGTGAGGACAATCACTGCCTTGTC CTTGGCTGCTCTTGCTGAGGCTGCTGCCCCATATGGCATTGAAAGCTTTGATTCTGTTCTGAAGCCATTGTGGAAGGGCATTAGGTCACACCGTGGCAAG GTCTTGGCTGCCTTCTTGAAAGCAATTGGTTTTATTATTCCTCTTATGGATGCTATGTATGCCAACTACTACACCAAGGAAGTCATGTTTATTCTGATAC GTGAGTTTCAGTCACCTGATGAAGAAATGAAGAAGATTGTGTTGAAAGTGGTTAAGCAATGTGTGAGTACAGAGGGTGTGGAGGCTGAATATATACGTTC TGATATTCTTCCTGAGTTCTTTAGGAACTTCTGGGTTAGAAGGATGGCCTTGGATAGGAGAAATTATAGGCAACTTGTGGAAACAACTGTTGAGATTGCT GACAAGGTTGGTGTTAAAGATATTGCTGGCAGAATTGTTGAGGATCTGAAAGATGAGAGTGAACCATATAGGCGTATGGTTATGGAAACAATTGAGAAGG TTGTTGCGAACATGGGTGCATCTGATATTGATTCTAGGTTGGAAGAGCTTTTGATTGATGGCATTCTCTATGCTTTCCAAGAGCAGACCAGTGATGATGC TAATGTGATGCTTAATGGGTTTGGTGCAGTTGTCAATTCTCTTGGACAGAGGGTGAAACCTTACCTTCCCCAGATTTGTGGTACCATTAAGTGGCGCTTG AACAACAAGAGCGCTAAAGTGAGACAGCAAGCTGCTGATCTTATTTCTAGGATTGCTGTTGTCATGAAGCAATGTCAGGAGGAACAACTGATGGGTCATC TTGGTGTTGTGTTGTATGAGTATTTGGGAGAAGAATACCCTGAAGTTCTTGGTTCAATTCTAGGAGCTCTCAAAGCAATTGTCAATGTCATTGGTATGAC CAAAATGACTCCTCCTATTAAGGACTTGCTTCCAAGACTGACACCAATTCTGAAGAATAGGCATGAGAAAGTCCAGGAGAACTGTATTGACCTTGTTGGT CGAATTGCTGATCGTGGAGCTGAGTTTGTTCCTGCCAGGGAGTGGATGAGGATTTGTTTTGAGCTTCTTGAGATGCTTAAGGCCCACAAGAAGGGCATTC GGCGTGCTACTGTGAACACTTTTGGTTACATTGCTAAGGCCATTGGACCGCAGGATGTCTTGGCGACTCTGTTAAATAATCTCAAGGTCCAGGAGCGCCA AAACCGGGTTTGCACAACTGTTGCAATTGCTATAGTTGCAGAAACCTGTTCACCTTTTACAGTCTTGCCTGCCTTGATGAATGAATATCGTGTCCCAGAG CTTAATGTGCAGAATGGTGTCTTAAAATCCCTCTCTTTCCTGTTCGAGTACATTGGCGAAATGGGTAAAGACTATATCTATGCAGTGACTCCATTACTTG AGGATGCACTCATGGACCGAGATTTAGTTCACAGGCAGACTGCAGCTTCCGCTGTTAAGCATATGGCTTTGGGTGTGGCTGGTTTGGGTTGTGAAGATGC ATTGGTCCACTTACTTAACTATGTGTGGCCCAACATATTTGAGACTTCCCCTCATGTGATAAATGCTGTCACTGAAGCCATTGAAGGAATGAGGGTGGCC TTAGGTGCTGCTGTTGTGTTGAACTACTGTCTTCAGGGGCTGTTCCATCCTGCCCGGAAGGTCAGGGAAGTGTACTGGAAGATATACAATTCACTGTATA TTGGAGCTCAGGATGCTCTTGTGGCAGCTTATCCTATACTGGAGGATGAGCAGGATAACGTTTATAGTAGGCCCGAGTTGATGATGTTTGTATAA
AA sequence Show only first row Show all	>Potri.001G310900.1 pacid=42789466 polypeptide=Potri.001G310900.1.p locus=Potri.001G310900 ID=Potri.001G310900.1.v4.1 annot-version=v4.1 MDPEIAKTQEERKKMEQQLASLTSLTFDRDLYGGVDREAYETSIPATDDEEPDMGLNEVAQRLASYTAPKSVLKEMPRGGDDSEETDGFRKPSRIIDRED DYRRRRLDRIISPERHDPFAAGEKTPDPSVRTYSDVMMEESLKKQKEELLRKIANKKKEEEEARAGKEENVASTVPKRSNRWDQSKEDDGKVVKKAKTGS DWDLPDATPGIGRWDATPTPGRIGDATPGAGRRNRWDETPTPGRVVDSDATPAGGVTPGATPAGVAWDATPKGMVTPTPKRQKSRWDETPASMDSATPAL GAVTPSLGGVTPGPTPLGAIDMATPTPNALAMRGAITPEQYNLLRWEKDIEERNRPLTDEELDAMFPQEGYKILEPPASYVPIRTPARKLLATPTPMGTP LYSIPDENRGQQFDLGQEPPAGLPFMKPEDYQYFGALLNEEDEEELSPEEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQ PTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGI PALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGK VLAAFLKAIGFIIPLMDAMYANYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAEYIRSDILPEFFRNFWVRRMALDRRNYRQLVETTVEIA DKVGVKDIAGRIVEDLKDESEPYRRMVMETIEKVVANMGASDIDSRLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRL NNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVG RIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVTEAIEGMRVA LGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPILEDEQDNVYSRPELMMFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64270			splicing factor, putative (.1)		Potri.001G310900 [exp]	0	1
AT1G61040		VIP5	vernalization independence 5, ...		Potri.011G047900 [exp]	1.00	0.8577
AT4G22350			Ubiquitin C-terminal hydrolase...		Potri.006G010100 [exp]	2.44	0.7676
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.004G171600 [exp]	4.69	0.8162
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.002G139700 [exp]	10.48	0.7454
AT4G31880			unknown protein		Potri.018G020400 [exp]	12.96	0.7573
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.010G248100 [exp]	13.63	0.6926
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Potri.013G048700 [exp]	31.74	0.7181
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.008G182500 [exp]	37.14	0.7182
AT5G64550			loricrin-related (.1)		Potri.003G023300 [exp]	38.52	0.7422
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Potri.014G080800 [exp]	42.07	0.7082

Compare expression of checked genes

Potri.001G310900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.