Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10360 421 / 3e-151 RPS6B, EMB3010 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) AT4G31700 397 / 9e-142 RPS6A, RPS6 ribosomal protein S6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096300 [exp] 452 / 2e-163 AT5G10360 417 / 2e-149 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.005G072700 [exp] 447 / 1e-161 AT5G10360 416 / 2e-149 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.005G162600 [exp] 447 / 1e-161 AT5G10360 419 / 1e-150 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.002G099500 [exp] 444 / 2e-160 AT5G10360 413 / 6e-148 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027260 [exp] 431 / 4e-155 AT5G10360 448 / 8e-162 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10031021 [exp] 431 / 7e-155 AT5G10360 448 / 4e-162 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10007376 [exp] 428 / 6e-154 AT5G10360 451 / 3e-163 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10035414 [exp] 427 / 8e-153 AT5G10360 446 / 5e-160 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10020794 [exp] 431 / 3e-146 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01092 [poplar] [flax] Ribosomal_S6e Ribosomal protein S6e
Representative CDS sequence Show only first row Show all	>Potri.001G311000.1 pacid=42793585 polypeptide=Potri.001G311000.1.p locus=Potri.001G311000 ID=Potri.001G311000.1.v4.1 annot-version=v4.1 ATGAAGTTTAACATTGCAAATCCAACAACTGGGTGCCAAAAGAAGCTTGAGATCGATGATGATCAGAAGCTGCGAGCTTTTTTTGACAAGAGGATCTCAC AGGAGGTCAGTGGAGATTCCCTTGGTGAGGAGTTCAATGGATATGTGTTCAAAATCATGGGAGGCTGTGACAAGCAAGGATTTCCAATGAAGCAGGGAGT TCTGACTCCTGGTCGTGTTCGTTTGTTGCTTCACAGAGGCACCCCTTGCTTCCGTGGATATGGAAGGCGCAATGGAGAACGCAGGAGAAAGTCTGTTCGT GGATGCATTGTTAGTCAAGACCTCTCTGTTCTGAACTTGGTTATTGTGAAGAAGGGTGATAATGATCTACCTGGTTTGACTGACACTGAGAAACCCAGGA TGAGGGGTCCAAAGAGGGCATCCAAAATCAGGAAGCTTTTTAACCTCTCTAAGGAGGATGATGTTCGCAAATATGTGAACACATACCGCAGGACCTTCAC AACAAAATCTGGGAAGAAAGTCAGTAAAGCTCCAAAGATACAAAGGCTTGTAACTCCATTGACTCTCCAAAGGAAGCGAGCCAGGATTTCAGACAAAAAG AAGAGAATTGCAAAGGCCAAGTCAGAAGCAGCTGAGTACCAGAAACTGCTTGCTACTCGGTTGAAGGAGCAGCGTGAGCGCCGTAGTGAGAGCTTAGCAA AAAAGAGATCCAGGCTCTCAATTGCTTCCAAGCCATCTGTTGCTGCATAG
AA sequence Show only first row Show all	>Potri.001G311000.1 pacid=42793585 polypeptide=Potri.001G311000.1.p locus=Potri.001G311000 ID=Potri.001G311000.1.v4.1 annot-version=v4.1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDSLGEEFNGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVR GCIVSQDLSVLNLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISDKK KRIAKAKSEAAEYQKLLATRLKEQRERRSESLAKKRSRLSIASKPSVAA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.001G311000 [exp]	0	1
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.010G060400 [exp]	2.64	0.8893
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.013G128600 [exp]	2.82	0.8864
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Potri.015G130000 [exp]	6.48	0.8825	RPS13.4
AT5G02960			Ribosomal protein S12/S23 fami...		Potri.010G217100 [exp]	7.07	0.8459	RPS23.2
AT1G26880			Ribosomal protein L34e superfa...		Potri.012G108400 [exp]	8.36	0.8722	RPL34.4
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Potri.002G190000 [exp]	11.74	0.8662
AT2G18110			Translation elongation factor...		Potri.009G018600 [exp]	12.00	0.7930
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Potri.008G103400 [exp]	12.00	0.7780
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.005G162600 [exp]	12.64	0.8345
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.001G295902 [exp]	13.03	0.8339

Compare expression of checked genes

Potri.001G311000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.