Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17840 625 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G21090 570 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 539 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 520 / 1e-176 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT2G28070 399 / 4e-129 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT3G55100 259 / 5e-77 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G55110 257 / 1e-75 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT2G13610 256 / 1e-75 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT3G55130 257 / 2e-75 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G55090 256 / 6e-75 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G311300 [exp] 1370 / 0 AT1G17840 617 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051300 [exp] 989 / 0 AT1G17840 611 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 890 / 0 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 889 / 0 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051000 [exp] 847 / 0 AT1G17840 596 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G155300 [exp] 639 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 635 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G255800 [exp] 577 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 570 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023154 [exp] 807 / 0 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10040644 [exp] 575 / 0 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10027354 [exp] 520 / 2e-176 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009961 [exp] 519 / 2e-176 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 507 / 4e-171 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 488 / 1e-164 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 479 / 6e-161 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10018268 [exp] 433 / 2e-145 AT1G17840 849 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10027353 [exp] 436 / 4e-145 AT3G21090 661 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10031063 [exp] 414 / 1e-135 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.001G312300.1 pacid=42789548 polypeptide=Potri.001G312300.1.p locus=Potri.001G312300 ID=Potri.001G312300.1.v4.1 annot-version=v4.1 ATGTCTTCTCTTCCTTACCCTTCCAAGCAATCATCTGCAAGCGATCATAGGCTTAATTATCAGTCAACATCTTTGCGTTATAACCACGAAATTAAGGCCA CACTAGAAGTAAAAACTGTTGTTCCACCGCCAAGCAGTAGGGGAGGAGGAGAAGGTGCAGCCACTGATGATAATGGTGTTTTCTTGACTTGGAAGGATTT GCGGGTGACTGTTTCCAATGGGAAAAAAGGCAGTAAATCAATCCTTCAGGGTTTAACTGGTTATGCTCAGCCTGGAGAGCTTTTGGCTATAATGGGTCCT TCAGGCTGTGGCAAGTCAACACTTCTTGATACATTGGCAGGGAGACTGGGTTCAAACACACGACAAACAGGAGACATACTAATCAATGGCCACAAACAAA GGCTGGCTTATGGTACATCGGCTTATGTAACTCAAGATGAAACCTTAATCACAACATTAACAGTCAAAGAAGCTGTGTACTACTCAGCTCAGCTTCAATT GCCAGACTCAATGTCAAGGGCAGAAAAGAAAGAGAGAGCAGAGGTGACAATAAGAGAAATGGGGCTGCAAGATGCCATGAATACAAGAATTGGAGGATGG GGATCTAAAGGACTTAGTGGTGGTCAAAAGAGGAGAGTGAGCATTTGCATAGAGATACTAACACATCCGAAACTTCTCTTTCTTGATGAACCCACAAGTG GGCTTGATAGTGCTGCATCATATTATGTCATGAGCGGAATTGTTAGATTTGACCGCAAGGATGAAAATAGAAGAACTGTAATTGCATCCATTCATCAGCC TAGTGGTGAAGTCTTTCAGCTTTTCGACAGTCTTTGCCTGCTCAGTGCTGGTAAAGTAGTGTATTTTGGCCCAGCTTCTCAAGCAAATGAGTTTTTTGCC TTAAATGGCTTTCCTTGCCCGACTCTCCAGAATCCATCTGATCATTTCCTGAAAACCATAAACAAAGATTTCGAAACGGATCCTGAACAAGGTTTAGAAG ATGCAATTACCGCAGAGGTAGCGATTAATACTCTGACAAAGGCGTATAAATCATCAGACCATTATCAAAAGGTTAAAAGATTAGTCACAGAAATATGTAA AAAGGATTGTGGGACATTAGAGGAAAGAAGCCATTCTAGCTTCCTTACTCAGTGTCTTGTGCTTACAAGAAGATCTTTCGTAAACATGTATCGAGATCTT GGGTACTATTGGTTGCGGGTCGCCATCTATGTCTCATTAGCATTAGGCCTTGCCACTTTGTTTTACAACCTTGGATCTGATAATGATTCAATTCAGGATA GAGGTTCTCTGCTAATGTTCATAGCTTCTTTCTTAACGTTCATGACAATCGGAGGATTCCCTTCTTTTGTGGAAGATATGAAGGTATTTGAAAGAGAAAG GTTAAATGGGCACTATGGTGCCACTGCTTTTGTTCTTGGCAACACATTCTCTGCCTTTCCATACTTGTTACTGATATCAGTAATTCCTGGAGCAATAACT TATTACCTTCCTGGACTTCACAAGGGATATGAACACTTCATATACTTTGTTTTAGTGTTGTTTGCTTGCATGATGTTGGTGGAGAGCTTAATGATGACCG TTGCGAGTATGGTGCCAAATTTTCTGATGGGAATAATAACAGGAGCTGGGATTCAAGCTTTCATGATTCTAGGTGGGGGATTCTTTAGATTGCCAAATGA TCTCCCTCAGCCATTCTGGAAGTATCCCATGTACTACATTGCCTTCCATAAGTATGCCTACCAAGGAATGTTCAAGAACGAATTTGAAGGACTAACATTT CCTAGCAATCAAGCCGGAGGGCCACGGACGATTCCCGGCGAACAAATTCTGAGAGATCGATGGCAAGTGGAGATGGGTGTCTCCAAGTGGGTTGATCTTG CCATTTTGCTTGGAATGGTGGTTCTATACAGAATTTTGTTCTTGGTTATTATCAAGACCTCAGAGAAGATAAAACCCATTATTGCAGCTATTGTATCGGT ACCTCCCAAGCAAACAACAGAAATCATGGAAATCCCCTTAACTACACCTTTGCATGGGGATCAATCTGTAGTCTAG
AA sequence Show only first row Show all	>Potri.001G312300.1 pacid=42789548 polypeptide=Potri.001G312300.1.p locus=Potri.001G312300 ID=Potri.001G312300.1.v4.1 annot-version=v4.1 MSSLPYPSKQSSASDHRLNYQSTSLRYNHEIKATLEVKTVVPPPSSRGGGEGAATDDNGVFLTWKDLRVTVSNGKKGSKSILQGLTGYAQPGELLAIMGP SGCGKSTLLDTLAGRLGSNTRQTGDILINGHKQRLAYGTSAYVTQDETLITTLTVKEAVYYSAQLQLPDSMSRAEKKERAEVTIREMGLQDAMNTRIGGW GSKGLSGGQKRRVSICIEILTHPKLLFLDEPTSGLDSAASYYVMSGIVRFDRKDENRRTVIASIHQPSGEVFQLFDSLCLLSAGKVVYFGPASQANEFFA LNGFPCPTLQNPSDHFLKTINKDFETDPEQGLEDAITAEVAINTLTKAYKSSDHYQKVKRLVTEICKKDCGTLEERSHSSFLTQCLVLTRRSFVNMYRDL GYYWLRVAIYVSLALGLATLFYNLGSDNDSIQDRGSLLMFIASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVLGNTFSAFPYLLLISVIPGAIT YYLPGLHKGYEHFIYFVLVLFACMMLVESLMMTVASMVPNFLMGIITGAGIQAFMILGGGFFRLPNDLPQPFWKYPMYYIAFHKYAYQGMFKNEFEGLTF PSNQAGGPRTIPGEQILRDRWQVEMGVSKWVDLAILLGMVVLYRILFLVIIKTSEKIKPIIAAIVSVPPKQTTEIMEIPLTTPLHGDQSVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.001G312300 [exp]	0	1
AT2G46970	bHLH	PIL1, bHLH124	phytochrome interacting factor...		Potri.014G111400 [exp]	4.00	0.9527
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014302 [exp]	4.47	0.9561
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Potri.001G251100 [exp]	4.89	0.9558
AT4G35160			O-methyltransferase family pro...		Potri.013G122400 [exp]	6.00	0.9498
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Potri.015G104500 [exp]	7.74	0.9587
AT1G56190			Phosphoglycerate kinase family...		Potri.008G084500 [exp]	12.16	0.9563
AT1G56190			Phosphoglycerate kinase family...		Potri.010G171500 [exp]	14.83	0.9515	Pt-PGK1.1
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Potri.016G017300 [exp]	14.96	0.9455
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Potri.005G161900 [exp]	16.58	0.9505
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.005G075400 [exp]	16.88	0.9463

Compare expression of checked genes

Potri.001G312300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.