Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22360 586 / 0 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 567 / 0 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22400 565 / 0 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 555 / 0 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 546 / 0 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 518 / 0 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G46670 266 / 6e-84 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT5G38010 260 / 1e-81 UDP-Glycosyltransferase superfamily protein (.1) AT3G11340 256 / 3e-80 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G46660 255 / 1e-79 UGT76E12 UDP-glucosyl transferase 76E12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G052166 [exp] 806 / 0 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 801 / 0 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 714 / 0 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 645 / 0 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 645 / 0 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 643 / 0 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 640 / 0 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052100 [exp] 635 / 0 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098300 [exp] 615 / 0 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041055 [exp] 639 / 0 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10024583 [exp] 575 / 0 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10031388 [exp] 571 / 0 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032220 [exp] 565 / 0 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10000993 [exp] 558 / 0 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013925 [exp] 553 / 0 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013924 [exp] 551 / 0 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032218 [exp] 544 / 0 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013923 [exp] 542 / 0 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024584 [exp] 535 / 0 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.001G312600.1 pacid=42790948 polypeptide=Potri.001G312600.1.p locus=Potri.001G312600 ID=Potri.001G312600.1.v4.1 annot-version=v4.1 ATGGGTTCCTTAGTTCCGGCTGATAAACCTCATGCTGTGTGCGTCCCTTTTCCAGCTCAGGGTCACATAAACCCAATGCTCAAACTAGCAAAACTACTCC ACTTCAAAGGCTTTCACGTAACCTTTGTTAATACAGAGTATAATCACAAACGCTTACTCAAGTCTAGAGGCACCAACTCCCTTGATGGCTTCCCAGACTT CCAGTTTGAGACTATCCCTGACGGTCTTCCATCATCAGATATTGCTGATGCCACTCAAGATGTCCCATCTCTTTGCAAATACACCTCCCAAACTGCTTTA GCCCCACTATGCGATCTTATTGCCAAACTCAACTCCTCAGGTGTAGCGCCCCAGGTGACATGTATTGTCGCTGATGCTTGCATGAGTTTCAGTCTTGATG CAGCTGAAGAATTTGGAATTCCTGAAGCAGTGTTTTGGACACCTAGCGCCTGTGGTGTTTTGGGCTACTCGCAGTATCGTCCTCTCATCGAAAGAGGCTT AATACCTCTGAAAGATGCGAGGGATCTAACAAATGGCTACTTAGAAACACCAGTAGATTGGATTCCAGGAATGAAAGATATCCGTTTGAAGGATCTTCCA ACTTTTATCAGAACTACAGACGTAAACGACGTCATGCTGCAATTCGTGAAAAGAGAAATTGACAGAACTTCAAGAGCTTCTGCTGTCATTCTTAACACAT TCGACTCCTTCGAACAAGATGTTTTGGATGCTCTCTCCCCAATGTTTCCTCCAATTTACACTGTTGGTCCTCTTCAATTGCTTGTTGATCAGATTCCAAA TGGTGATCTGAAAAATATTGGCTCCAATCTTTGGAAAGAACAGCCAGAGTGTATTGAATGGCTTGATTCCAAAGAACCAAAATCTGTGGTGTACGTAAAT TTTGGTAGCATCACTGTAATAACACCCCAGCAAATGATAGAATTTGCTTGGGGACTAGCCAACAGCAACCAAACTTTCTTATGGATAATAAGACCTGATA TTGTTCTAGGTGAAGCCGCAATGTTGCCACCTGAATTTTTATCTGAAACAAAGGATAGAGGCATGCTTGTAAGCTGGTGTCCCCAAGAACAAGTGTTGAA GCATCCTTCCATAGGAGGGTTTCTAAGTCACATGGGGTGGAATTCAACGTTGGACAGTATCTGTGGTGGCGTGCCAATGGTTTGTTGGCCATTTTTCGCT GAGCAACAGACCAACTGTAGGCTTGCCTGTACTGATCAATGGGGCATTGGCATGGAGATAGATAACAATGTGAAAAGAGATGAAGTGGAGAAACTTGTGA GAGAATTAATGGAGGGAGAGAAGGGAAAAGCAATGAAAAAGAAGGCAATGGAATGGAAAACCAAGGCAGAGGAGGCAGCTTTGGCCGGTAATGGTTCTCA TCGGAACCTGGATCAATTGGTAAAAGCTCTTTCTAACAAGAAAATAAGTTAG
AA sequence Show only first row Show all	>Potri.001G312600.1 pacid=42790948 polypeptide=Potri.001G312600.1.p locus=Potri.001G312600 ID=Potri.001G312600.1.v4.1 annot-version=v4.1 MGSLVPADKPHAVCVPFPAQGHINPMLKLAKLLHFKGFHVTFVNTEYNHKRLLKSRGTNSLDGFPDFQFETIPDGLPSSDIADATQDVPSLCKYTSQTAL APLCDLIAKLNSSGVAPQVTCIVADACMSFSLDAAEEFGIPEAVFWTPSACGVLGYSQYRPLIERGLIPLKDARDLTNGYLETPVDWIPGMKDIRLKDLP TFIRTTDVNDVMLQFVKREIDRTSRASAVILNTFDSFEQDVLDALSPMFPPIYTVGPLQLLVDQIPNGDLKNIGSNLWKEQPECIEWLDSKEPKSVVYVN FGSITVITPQQMIEFAWGLANSNQTFLWIIRPDIVLGEAAMLPPEFLSETKDRGMLVSWCPQEQVLKHPSIGGFLSHMGWNSTLDSICGGVPMVCWPFFA EQQTNCRLACTDQWGIGMEIDNNVKRDEVEKLVRELMEGEKGKAMKKKAMEWKTKAEEAALAGNGSHRNLDQLVKALSNKKIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.001G312600 [exp]	0	1
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.015G085600 [exp]	1.41	0.9738
AT1G78780			pathogenesis-related family pr...		Potri.001G389800 [exp]	2.00	0.9649
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G164900 [exp]	2.44	0.9664
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Potri.003G073900 [exp]	4.00	0.9543
AT5G37800	bHLH	ATRSL1, bHLH086	ARABIDOPSIS THALIANA RHD SIX-L...		Potri.017G126800 [exp]	4.24	0.9596
AT4G13580			Disease resistance-responsive ...		Potri.001G054100 [exp]	5.00	0.9602
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.009G022400 [exp]	7.93	0.9559
AT5G05340			Peroxidase superfamily protein...		Potri.013G156800 [exp]	8.48	0.9393	RIP1.3
AT1G74500	bHLH	TMO7, PRE3, ATB...	TARGET OF MONOPTEROS 7, activa...		Potri.015G063300 [exp]	8.48	0.9482
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.009G022800 [exp]	8.77	0.9504

Compare expression of checked genes

Potri.001G312600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.