Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58770 296 / 7e-100 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58780 276 / 3e-92 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58782 269 / 9e-90 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58784 267 / 1e-88 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G23410 251 / 1e-82 ACPT cis-prenyltransferase (.1) AT2G23400 213 / 3e-68 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G17570 143 / 1e-40 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60510 122 / 7e-33 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60500 121 / 2e-32 Undecaprenyl pyrophosphate synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G045500 [exp] 382 / 6e-134 AT5G58770 325 / 1e-111 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.001G250900 [exp] 365 / 1e-127 AT5G58770 313 / 1e-106 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.002G039400 [exp] 87 / 8e-20 AT2G17570 259 / 1e-86 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.005G100800 [exp] 88 / 1e-19 AT2G17570 243 / 2e-78 Undecaprenyl pyrophosphate synthetase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036178 [exp] 337 / 6e-115 AT5G58770 357 / 7e-123 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10038313 [exp] 331 / 4e-114 AT5G58770 351 / 8e-122 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10002788 [exp] 136 / 5e-38 AT2G17570 342 / 9e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10032757 [exp] 135 / 6e-38 AT2G17570 344 / 1e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10005789 [exp] 125 / 3e-33 AT2G17570 316 / 2e-107 Undecaprenyl pyrophosphate synthetase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01255 [poplar] [flax] Prenyltransf Putative undecaprenyl diphosphate synthase
Representative CDS sequence Show only first row Show all	>Potri.001G312700.2 pacid=42791222 polypeptide=Potri.001G312700.2.p locus=Potri.001G312700 ID=Potri.001G312700.2.v4.1 annot-version=v4.1 ATGCTTTCGTTGCGCCTCCGCTCCTCAGTTTGCAAGACCCTTCCTCCTCAAAAATTCTTTCAATTCTTTAGCCATCAAAAGACCAGTGATGACCAAACAC ACGGCTTTCCTCCACTTCCCGCAACGAAAACGAACTCCGGTCTCAAAGAAGAGGAGAAAGGAGGAATAGAGCAAGCTATACAGTTGCCGGAGGGATTACG CAGAGAGTCCATGCCCCGGCATGTTGCTGTAATCATGGACGGAAATTCCAGGTGGGCTCGGCAACGAGGGATGCTCACACCTTCTGGTCATGAAGCTGGC GTGAGGTCATTGAAAGAGTTTATAAGGCTTTGCCTTCAATGGGGTATTAAGGTTGTCACCGTTTTTGCATTTTCTATAGATAATTGGAATAGGCCTAAGG AGGAGGTTGATATCGTCATGACTATGATTGAGAATCTGTTAAAGTCTGGTTTGGATGATTTTATCAGGGAAGGTACTCGAGTCTCTATAATAGGTGATAC CTCAAGGGTCCCAAAGTCTTTGCAGAGAACGATATGTGACATAGAAGAGATGACAAGAGAGAACTCAAAATTCCATTTCATCATGGCTATCAGCTATAGC GGGACATATGATGTTGTACAAGCATGCAAAAGTGTTGCTCAAAAGGTAAAGGATGGTGTTATTCAAGTGGAGGACATCAATGAAAGTGCAGTTCAACAGG AATTAGAAACCAAGTGTTGCGAGTTTCCTTGTCCTGATTTGTTAATAAGAACAAGTGGTGAACTTAGAATTAGCAATTTTTTGCTGTGGCAGTCAGCCTA TAGTGAGCTTTTCTTCGCAAAAGCACTATGGCCTGATTTTGGAAAGGCTGATTTTGTAGAGGCCTTAACTTCATATCAGCATAGGCAGAGACGTTATGGT GGTCGATATTCATAA
AA sequence Show only first row Show all	>Potri.001G312700.2 pacid=42791222 polypeptide=Potri.001G312700.2.p locus=Potri.001G312700 ID=Potri.001G312700.2.v4.1 annot-version=v4.1 MLSLRLRSSVCKTLPPQKFFQFFSHQKTSDDQTHGFPPLPATKTNSGLKEEEKGGIEQAIQLPEGLRRESMPRHVAVIMDGNSRWARQRGMLTPSGHEAG VRSLKEFIRLCLQWGIKVVTVFAFSIDNWNRPKEEVDIVMTMIENLLKSGLDDFIREGTRVSIIGDTSRVPKSLQRTICDIEEMTRENSKFHFIMAISYS GTYDVVQACKSVAQKVKDGVIQVEDINESAVQQELETKCCEFPCPDLLIRTSGELRISNFLLWQSAYSELFFAKALWPDFGKADFVEALTSYQHRQRRYG GRYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58770			Undecaprenyl pyrophosphate syn...		Potri.001G312700 [exp]	0	1
AT1G74500	bHLH	TMO7, PRE3, ATB...	TARGET OF MONOPTEROS 7, activa...		Potri.015G063300 [exp]	2.44	0.9529
AT4G13580			Disease resistance-responsive ...		Potri.001G054100 [exp]	8.30	0.9320
AT5G25460			Protein of unknown function, D...		Potri.001G174400 [exp]	10.90	0.9044
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.001G312600 [exp]	11.13	0.9280
AT1G71740			unknown protein		Potri.005G198200 [exp]	12.12	0.8346
AT5G37800	bHLH	ATRSL1, bHLH086	ARABIDOPSIS THALIANA RHD SIX-L...		Potri.017G126800 [exp]	13.96	0.9229
AT1G63410			Protein of unknown function (D...		Potri.001G106400 [exp]	15.49	0.9123
AT1G80100		AHP6	histidine phosphotransfer prot...		Potri.001G191900 [exp]	16.49	0.9045	AHP6.1
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.015G085600 [exp]	17.83	0.9208
AT1G15385			unknown protein		Potri.003G062300 [exp]	20.49	0.9208

Compare expression of checked genes

Potri.001G312700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.