Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22310 111 / 9e-26 ATMBD8, MBD8 methyl-CPG-binding domain 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G164100 [exp] 236 / 2e-64 AT1G22310 100 / 6e-22 methyl-CPG-binding domain 8 (.1.2) Potri.002G097700 [exp] 228 / 7e-62 AT1G22310 105 / 2e-23 methyl-CPG-binding domain 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035631 [exp] 445 / 2e-144 AT1G22310 139 / 4e-35 methyl-CPG-binding domain 8 (.1.2) Lus10010764 [exp] 401 / 5e-124 AT1G02170 216 / 5e-62 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G312900.1 pacid=42791004 polypeptide=Potri.001G312900.1.p locus=Potri.001G312900 ID=Potri.001G312900.1.v4.1 annot-version=v4.1 ATGGCTACAACAGCCACTCGCACCACCACACCCACCACCACCAAACCACCGCAACCTCTCCCACCAAACTTCCTCCCTTACATAGACATGACAACCCTTT CCCAGTCAGAACTCCACAAACTCTCCCTCACCTTCTCCACCCCACCTTCCACCACTAATAACACCATAACCCCTACCATTGACCGCACAAACTTCAATGA AAGCGCCGGGTCTCGTCGTCAAACCTTCGCCCGCCCTTCCCACCACCACCACCGCCACCGCCTCGCCGCCACTCCCTTCACCAAAACCCTCCCTGACCCA CCTAACAATCCCATCCCTAATGACCCTGACCGCCTCGAAAACCCCACCATAATTAAATTCCTCAAGAACCTCTTATCTTCACACCCTGAGTTTCAAGAAC CTGATTTCTCAGTGGAATTCGATACTTTCAATCATTTTAATCATCCCATCACTATCATTTCTAACTCATTAAAACCCCGACAAGTTTTAGATTTTGATAT GCCGCCGGGGGTACGGAAGAGAAAAAGAGGTAGAAAACCCAAAGTGAAAGCTTTGAGTATTGTGCATAGGGAAATGGGGTTAGAGATTGTAAATAGAAAA GGGGTGGTTGTAGATTTAGTGGGGTTGGCATGTTTAGATGATCCTTATAAAGATGAGTTGAAGAGAAGGACTGAAGGGATGGAGAAGGAAGAAGAGTTAT TGGGGTTTTTTAGAGAGTTGGGTGGACAATGGTGTAGTAGGAGAAAGAAGAGGAAGATTGTTGATGCGGGTGAGTTTGGAGATTTCTTGCCTGTTGGCTG GAAGCTTATTCTTGGACTTAAAAGGAAAGAGGGGCGCGCTTGGGTTTATTGCCGCAGATATCTAAGCCCTTCTGGACAACAATTTATATCCTGCAAGGAT GTATCTGCGTATTTGCAATCTTTAGTTGGACCTTATGATGCACAGCAAGCAAAGGATCATACTGGTCACAGTATTCAGCAGGACCATGGAGGGGCTCCTG TAAGTCATGCAGGTGCAATTGAAAGGTTGGAAGATCAGAGACAGTCCATTGAGCATCAGAAGCAAGTTTCCTTACTGGAAACTGACAATTTGGCAGAGGT TCAAATACGGGATCTTTTTGAATGCCATAAATGCAGAATGACATTTGATGAGAAGGGCACATATTTGGAACATCTTTTGTCATTTCACCAAAGAACTACA CGGAGGTATAGACTCGGTTCTTCTGTTGGGGACGGTGTGATAGTTAAAGACGGAAAATTTGAATGCCAGTTCTGCCATAAGGTGTTTCATGAAAGGCGCA GGTACAATGGTCATGTAGGAATCCACGTGAGGAATTATGTGAGGGGGATTGAAGATTCACCTGGTGTGAAGAACTATATGAGGGGGATTGAAGAATCACC TGCTGTCCAGTTGGCTCTGCAAAAGAGTGATCCTCCAACCCCTGATGACTTGCCTACAAGAATCTCCAAAATGGATGCGTTGATTGAAATAGCTCAGAAC TCCATTCGAGAAACATCGTCTTCTGGAGCTAATGATGAACAGAATGTGGTCTCTGATTCAAAACTTCCTGCTTCAGTTTCTGAACATGAACTGAATTCTG ATTCTCCTCCCAGTGAACCACAAATGGAAGATAGCATACCTGGCAAGTCTCTGGAACTCAATTTACACCAACAGAAAGTTGATTTTATGGTGATTGATGA AAAGATGGAGAAGGTTGAAGATGCTAGTGATGTTCAAGATTTTAAAACAGTTTCATCTGCTGATGCTCAACATCATAATACATTTGAAAGTCTTAGTAGA AATGATGGTCTGGCACCTGGCACCAATGAAATTGGCAGGTCTGGAATTAAAGGGGAAACAGTTTCTGAAAGCCATTCACTTGCTCCAGTGAATACTCAGA AAATATTTGGTGCTGAGAGTAATATGATTTTTGTTGGTTTTGACAGACCACACCAACATAAGCCTGATGAAGTGGATAAAAGCGTGAATGTTGAGATGAA AATTGGTTTTGGAAGCAATAACAGTATAGCAGATGGTAATGCTATTCAAGACACCGGAGGACATTCTTTCAAAGAAAATGTGCTTAAGTGTGGAGTTCCT GAGCAACAGTTGCAACTGCCCCATGACTTTTCAACACCAGAGGCAATCGTGGACAAGGGAGAGAATGAATTTGGTACAGCTGACCAAATACATGCCAAAG TTACAGGATTTGACGAGCTGAAGCTGGATGAAATAGAGCACCTAAAATTTAGTTTGGGGACAGGGCAAGAGCCTATGTCTCTGCATGAGGTTCCATTAGG TTTGGGAAATATTACTGAGATGGAAGCAGCATATGATGCCTCACTCCAGTTTGAATCAGATGTCATTGTAGACACAGCTGACAGACAACTAACAACTGTG TGTGTATGGTGTGGAGCTGAGTTCAGCCACGAGGCTTTTGATACAGAAATGCAGTCAGGTTCAGTTGGCTACATGTGTCCGGACTGCAAGGCCAAAATCT CAGGGCAGCTCAATATTTAA
AA sequence Show only first row Show all	>Potri.001G312900.1 pacid=42791004 polypeptide=Potri.001G312900.1.p locus=Potri.001G312900 ID=Potri.001G312900.1.v4.1 annot-version=v4.1 MATTATRTTTPTTTKPPQPLPPNFLPYIDMTTLSQSELHKLSLTFSTPPSTTNNTITPTIDRTNFNESAGSRRQTFARPSHHHHRHRLAATPFTKTLPDP PNNPIPNDPDRLENPTIIKFLKNLLSSHPEFQEPDFSVEFDTFNHFNHPITIISNSLKPRQVLDFDMPPGVRKRKRGRKPKVKALSIVHREMGLEIVNRK GVVVDLVGLACLDDPYKDELKRRTEGMEKEEELLGFFRELGGQWCSRRKKRKIVDAGEFGDFLPVGWKLILGLKRKEGRAWVYCRRYLSPSGQQFISCKD VSAYLQSLVGPYDAQQAKDHTGHSIQQDHGGAPVSHAGAIERLEDQRQSIEHQKQVSLLETDNLAEVQIRDLFECHKCRMTFDEKGTYLEHLLSFHQRTT RRYRLGSSVGDGVIVKDGKFECQFCHKVFHERRRYNGHVGIHVRNYVRGIEDSPGVKNYMRGIEESPAVQLALQKSDPPTPDDLPTRISKMDALIEIAQN SIRETSSSGANDEQNVVSDSKLPASVSEHELNSDSPPSEPQMEDSIPGKSLELNLHQQKVDFMVIDEKMEKVEDASDVQDFKTVSSADAQHHNTFESLSR NDGLAPGTNEIGRSGIKGETVSESHSLAPVNTQKIFGAESNMIFVGFDRPHQHKPDEVDKSVNVEMKIGFGSNNSIADGNAIQDTGGHSFKENVLKCGVP EQQLQLPHDFSTPEAIVDKGENEFGTADQIHAKVTGFDELKLDEIEHLKFSLGTGQEPMSLHEVPLGLGNITEMEAAYDASLQFESDVIVDTADRQLTTV CVWCGAEFSHEAFDTEMQSGSVGYMCPDCKAKISGQLNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.001G312900 [exp]	0	1
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.017G047600 [exp]	5.65	0.8640
AT3G48120			unknown protein		Potri.015G070100 [exp]	6.48	0.8357
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Potri.004G130600 [exp]	7.21	0.8500
AT2G37035			unknown protein		Potri.016G091400 [exp]	11.53	0.8343
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Potri.012G034300 [exp]	16.73	0.8247
AT4G03030			Galactose oxidase/kelch repeat...		Potri.002G041900 [exp]	18.11	0.7858
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	19.49	0.8390	CPC902,TTN8.3
AT2G45620			Nucleotidyltransferase family ...		Potri.014G073300 [exp]	19.49	0.8102
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	23.66	0.8362	Pt-RPB1.1
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Potri.015G141700 [exp]	23.74	0.8266

Compare expression of checked genes

Potri.001G312900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.