Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09430 466 / 1e-166 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 385 / 2e-134 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 320 / 5e-109 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 197 / 5e-61 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 191 / 6e-59 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 163 / 5e-48 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 163 / 1e-47 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 159 / 3e-46 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 142 / 1e-39 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 56 / 2e-08 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097400 [exp] 412 / 3e-145 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G074066 [exp] 402 / 2e-141 AT4G39955 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G094700 [exp] 391 / 5e-137 AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 226 / 1e-72 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G168600 [exp] 186 / 2e-56 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116900 [exp] 157 / 8e-46 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155700 [exp] 155 / 4e-45 AT2G18360 317 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 152 / 1e-43 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G024400 [exp] 151 / 2e-43 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023147 [exp] 401 / 5e-141 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 373 / 5e-130 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 332 / 1e-113 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10036159 [exp] 317 / 2e-109 AT5G09430 308 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 204 / 1e-63 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 193 / 2e-59 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 181 / 3e-54 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 177 / 1e-53 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10041747 [exp] 141 / 3e-39 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 123 / 7e-33 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.001G313100.1 pacid=42791255 polypeptide=Potri.001G313100.1.p locus=Potri.001G313100 ID=Potri.001G313100.1.v4.1 annot-version=v4.1 ATGATGTCAAAATGTTTCAGCTTTACAGCATCCCGGGATTGGTTCTACCGCTACTCATTCGCCAAGGCCGGTCTTCGTGCCCACTCCGCTAATCTTGGAG ATGGCACCATTATGCATTGTTGGGTACCAAGAATCATCAAATCATCGAAACCCAGTCTTCTGCTTCTCCATGGCTTTGGAGCCAATGCAATGTGGCAATA TGGTCAGCATCTCCATATCTTCACATCACGTTTCAATGTCTATGTTCCGGACCTTCTTTTCTTCGGTGAGTCCTACACATCCAGGCCTGAAAGAACCGAG TCTTTCCAGGCTCAATGCGTTATGAGGCTAATGGAGGCACATGGGGTGCATAGAATGAATCTTGTTGGGATCAGTTATGGAGGATTTGTGGGGTATAGCA TGGCTGCACAGTTTCAAGAGAAAATAGAAAAAGTTGTGTTGTGTTGTGCTGGGGTTTGCTTGGAAGAAAAGGATATGGACAATGGTTTGTTTGCTGTTCC AAATTTGGATGAAGCAGCCAGCATTTTGTTGCCACAGACAGCAGAGAAATTGAGGGAGTTGATGCGGTTTTCGTTTGTCAAACCTGCCATAGGCATACCG TCTTTCTTTCTCACAGATTTTATTGATGTCATGTGTACAGATTATGTTAAGGAGAAGAGGGAATTGATCCAAGCCATACTTCATGGTCGAAACCTTTCTG TTCTACCAAAGATCACACAGCCAACATTAATAATATGGGGAGAGAAAGATCAAATCTTCCCTGTGGAATTGGGGCACAGATTGAAAAGGCATGTGGGAGA AAGTTCTCAGTTAGTGATCGTTAAGAATGCAGGACATGCAGTTAATTTAGAGAAGGCCAAGGAATTTGCTAAGCACTTAAAATCATTCCTCATTGATTCA GCCGCATCTCCATCTCCATCTCCAGGATCCTTGACAGATTTCATCCACGACAAGAATGAAGGATGA
AA sequence Show only first row Show all	>Potri.001G313100.1 pacid=42791255 polypeptide=Potri.001G313100.1.p locus=Potri.001G313100 ID=Potri.001G313100.1.v4.1 annot-version=v4.1 MMSKCFSFTASRDWFYRYSFAKAGLRAHSANLGDGTIMHCWVPRIIKSSKPSLLLLHGFGANAMWQYGQHLHIFTSRFNVYVPDLLFFGESYTSRPERTE SFQAQCVMRLMEAHGVHRMNLVGISYGGFVGYSMAAQFQEKIEKVVLCCAGVCLEEKDMDNGLFAVPNLDEAASILLPQTAEKLRELMRFSFVKPAIGIP SFFLTDFIDVMCTDYVKEKRELIQAILHGRNLSVLPKITQPTLIIWGEKDQIFPVELGHRLKRHVGESSQLVIVKNAGHAVNLEKAKEFAKHLKSFLIDS AASPSPSPGSLTDFIHDKNEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09430			alpha/beta-Hydrolases superfam...		Potri.001G313100 [exp]	0	1
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.004G043600 [exp]	13.63	0.5603
					Potri.006G047250 [exp]	20.24	0.5463
AT1G75590			SAUR-like auxin-responsive pro...		Potri.005G237000 [exp]	29.22	0.5293
					Potri.006G283900 [exp]	35.14	0.5714
AT5G05800			unknown protein		Potri.003G192350 [exp]	45.00	0.5497
AT4G29250			HXXXD-type acyl-transferase fa...		Potri.018G032700 [exp]	52.66	0.4929
					Potri.017G071950 [exp]	53.96	0.5123
AT1G63640			P-loop nucleoside triphosphate...		Potri.012G056700 [exp]	56.68	0.4402
					Potri.001G293700 [exp]	58.32	0.4495
					Potri.010G138550 [exp]	70.33	0.4813

Compare expression of checked genes

Potri.001G313100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.