Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55570 85 / 2e-22 unknown protein AT5G41761 74 / 2e-18 unknown protein AT5G55620 73 / 9e-18 unknown protein AT3G09950 71 / 5e-17 unknown protein AT5G06010 60 / 1e-12 unknown protein AT3G11405 61 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G313700 [exp] 86 / 2e-23 AT3G55570 93 / 2e-26 unknown protein Potri.003G136700 [exp] 82 / 9e-22 AT5G41761 102 / 4e-30 unknown protein Potri.012G031900 [exp] 82 / 2e-21 AT5G41761 88 / 2e-24 unknown protein Potri.006G017700 [exp] 81 / 6e-21 AT5G41761 83 / 6e-22 unknown protein Potri.014G095000 [exp] 76 / 4e-19 AT5G41761 97 / 1e-27 unknown protein Potri.014G095100 [exp] 73 / 5e-18 AT5G41761 92 / 3e-26 unknown protein Potri.002G167900 [exp] 70 / 7e-17 AT5G41761 86 / 1e-23 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038794 [exp] 75 / 1e-18 AT3G09950 82 / 6e-22 unknown protein Lus10000541 [exp] 74 / 2e-18 AT5G41761 96 / 2e-27 unknown protein Lus10017552 [exp] 74 / 1e-17 AT5G41761 94 / 2e-25 unknown protein Lus10039065 [exp] 73 / 1e-17 AT3G09950 85 / 6e-23 unknown protein Lus10012634 [exp] 72 / 2e-17 AT5G41761 85 / 6e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G313801.1 pacid=42793551 polypeptide=Potri.001G313801.1.p locus=Potri.001G313801 ID=Potri.001G313801.1.v4.1 annot-version=v4.1 ATGGGGCGCGGGCGCTACGTCTCTGGTCTTACTCTTCTTTTTCCTGAAGGAACCCACAAGGAAAACTGTGGCTGCCACAAAGTGCAAGAGGAGAATAGAA AAAACAAGGAACCCAGTACCAGTACTCGTAGTTTGCTCCCAAAGATGATTAGAGAAGAGGACACCGGTAGCAGCTTTCAGATGCCACTCCACTACCCAAA ATACACCAAGGAGGATTATGAAGACATGCCTGAATCGAAGATTGACCTTCTCCTGGCTTCCTATGGCTTATCTACTCATGGTAACTTGAACTACAAGAGA AAGTTTGTAATGCAAGCCTTTCTGTGGCCTGATTCTTCCACCAAAGGAAAACCAAGTTCTTGA
AA sequence Show only first row Show all	>Potri.001G313801.1 pacid=42793551 polypeptide=Potri.001G313801.1.p locus=Potri.001G313801 ID=Potri.001G313801.1.v4.1 annot-version=v4.1 MGRGRYVSGLTLLFPEGTHKENCGCHKVQEENRKNKEPSTSTRSLLPKMIREEDTGSSFQMPLHYPKYTKEDYEDMPESKIDLLLASYGLSTHGNLNYKR KFVMQAFLWPDSSTKGKPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55570			unknown protein		Potri.001G313801 [exp]	0	1
					Potri.014G097450 [exp]	15.52	0.7330
AT1G18530			EF hand calcium-binding protei...		Potri.015G052600 [exp]	19.69	0.7310
AT2G28085			SAUR-like auxin-responsive pro...		Potri.010G226400 [exp]	24.97	0.6472	SAUR65
AT4G31830			unknown protein		Potri.018G018300 [exp]	25.78	0.6068
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037300 [exp]	90.06	0.6702
AT1G28680			HXXXD-type acyl-transferase fa...		Potri.004G053500 [exp]	102.74	0.5745
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037500 [exp]	118.99	0.6161
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.015G107600 [exp]	120.56	0.6351
AT1G64295			F-box associated ubiquitinatio...		Potri.014G187100 [exp]	142.67	0.6541
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Potri.006G028900 [exp]	164.12	0.6393

Compare expression of checked genes

Potri.001G313801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.