Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48820 131 / 1e-37 ICK6, KRP3 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) AT2G32710 122 / 2e-33 ICK7, ACK2, KRP4 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) AT3G24810 78 / 2e-17 ICK3, KRP5 kip-related protein 5, Cyclin-dependent kinase inhibitor family protein (.1) AT1G49620 60 / 6e-11 ICN6, ICK5, KRP7 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) AT3G19150 60 / 1e-10 ACK1, ICK4, KRP6 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2) AT3G50630 52 / 6e-08 ICK2, KRP2 KIP-related protein 2 (.1) AT2G23430 48 / 1e-06 ICK1, KRP1 KIP-RELATED PROTEIN 1, Cyclin-dependent kinase inhibitor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G054000 [exp] 322 / 5e-112 AT5G48820 127 / 3e-36 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.002G242100 [exp] 169 / 3e-52 AT5G48820 177 / 6e-56 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.009G103600 [exp] 62 / 1e-11 AT1G49620 92 / 6e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) Potri.004G142100 [exp] 59 / 2e-10 AT1G49620 91 / 7e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) Potri.005G137500 [exp] 49 / 5e-07 AT3G19150 50 / 2e-07 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2) Potri.007G042300 [exp] 45 / 1e-05 AT2G23430 / KIP-RELATED PROTEIN 1, Cyclin-dependent kinase inhibitor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043139 [exp] 189 / 1e-59 AT2G32710 143 / 2e-41 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) Lus10032611 [exp] 172 / 1e-52 AT2G32710 139 / 1e-39 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) Lus10011862 [exp] 127 / 9e-36 AT5G48820 146 / 2e-43 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Lus10022796 [exp] 98 / 2e-24 AT5G48820 94 / 4e-23 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02234 [poplar] [flax] CDI Cyclin-dependent kinase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.001G314000.4 pacid=42787750 polypeptide=Potri.001G314000.4.p locus=Potri.001G314000 ID=Potri.001G314000.4.v4.1 annot-version=v4.1 ATGAAAAAGAGGTTTCAGGAAATGGGCAAGTACATGAGGAAAGCTAAAACCACAAGCGATGTAGCCGTCATGGACTTGACTCACGGTGTCCGTACACGAG CCAGAACCCTAGCTCTCAAGAAACAACAAGGGGTCAAAGCATCTCCTCCATCGTCTCCTGCTGGTTACCTCCAGCTTCGCAGCCGCCGTCTCGAGAAGAA ACCGCCCCCAATTCCGTCATTGCATCATGATTCTCCCAGAAGGCAGCATCATAGGCAGGGTGGTCAGAATAGTAGTAAATTGGGTCAGCAGCAGCAGCAA GAAGAAGTAGAAATCCCTAGCCCTAATCTGAAATCGAGTTCCGGGTCGGGTCAAGAAAAAGAAAGGGGAGAGAGTAAAGTGGACAGTAGAGAAGTTGAAG AGAATAATAACAGCAACAGTAAAGACTTGGGTTCTTTTGGAGATAATGTTTTGGATATTGAAGGTAGAGATAGGAGCACTAGGGAATCGACTCCTTGCAA TTTAACAAGAGGCACAGAAGACGCAAGAACCCCTGGTTCTACTACTAAGCCTGCAAACCCAACTGAAAGTAGCAGGAGGTTACATAACTCAACTCGAAGA CACATCCCAACGGCCCATGAAATGGATGAGTTCTTTGGCCCGGCTGAAGAAGAGCAGCTAAGGCAATTTACTGAGAAGTATAACTTTGACCCCGTTAGTG ACAAGCCTCTCCATGGACGTTATGAATGGGAGAAATTGGATCGTTAG
AA sequence Show only first row Show all	>Potri.001G314000.4 pacid=42787750 polypeptide=Potri.001G314000.4.p locus=Potri.001G314000 ID=Potri.001G314000.4.v4.1 annot-version=v4.1 MKKRFQEMGKYMRKAKTTSDVAVMDLTHGVRTRARTLALKKQQGVKASPPSSPAGYLQLRSRRLEKKPPPIPSLHHDSPRRQHHRQGGQNSSKLGQQQQQ EEVEIPSPNLKSSSGSGQEKERGESKVDSREVEENNNSNSKDLGSFGDNVLDIEGRDRSTRESTPCNLTRGTEDARTPGSTTKPANPTESSRRLHNSTRR HIPTAHEMDEFFGPAEEEQLRQFTEKYNFDPVSDKPLHGRYEWEKLDR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.001G314000 [exp]	0	1
AT1G34770			unknown protein		Potri.005G164300 [exp]	1.00	0.8383
AT1G70000	MYB		myb-like transcription factor ...		Potri.015G069000 [exp]	3.87	0.8068
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.004G197400 [exp]	4.00	0.8177	Pt-EIN3.1
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Potri.018G151300 [exp]	11.09	0.8169
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.003G163000 [exp]	13.26	0.8107
AT3G01860			unknown protein		Potri.001G332500 [exp]	14.96	0.7836
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Potri.003G194600 [exp]	15.87	0.7824
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.011G150800 [exp]	16.79	0.7106
AT4G03030			Galactose oxidase/kelch repeat...		Potri.002G041900 [exp]	18.16	0.7595
AT1G07870			Protein kinase superfamily pro...		Potri.009G026500 [exp]	19.20	0.7398

Compare expression of checked genes

Potri.001G314000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.