Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32730 1617 / 0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) AT1G04810 1543 / 0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G054400 [exp] 1812 / 0 AT2G32730 1642 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) Potri.004G183750 [exp] 253 / 9e-77 AT2G32730 265 / 9e-82 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) Potri.004G183675 [exp] 123 / 5e-32 AT2G32730 105 / 1e-26 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) Potri.017G014800 [exp] 44 / 0.0005 AT2G20580 1399 / 0.0 26S proteasome regulatory subunit S2 1A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007140 [exp] 1602 / 0 AT2G32730 1672 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) Lus10016681 [exp] 1512 / 0 AT2G32730 1602 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01851 [poplar] [flax] PC_rep Proteasome/cyclosome repeat CL0020 [poplar] [flax] TPR PF13646 [poplar] [flax] HEAT_2 HEAT repeats
Representative CDS sequence Show only first row Show all	>Potri.001G314300.1 pacid=42788582 polypeptide=Potri.001G314300.1.p locus=Potri.001G314300 ID=Potri.001G314300.1.v4.1 annot-version=v4.1 ATGGCGACAACTATGGTTAGCTCCGCTGGTGGACTGTTAGCTATGCTTAATGAGAGCCATCCTTTGTTAAAACAACACGCACTTTACAATCTCAACAACT TAGTTGATCAATTTTGGCCTGAGATCTCAACTAGTGTGCCTATAATAGAGAGTTTGTATGAAGATGATGAGTTTGATCTGCATCAGAGACAACTTGCTGC ATTGCTTGTTTCTAAGGTTTTCTATTATTTGGGTGAACTTAATGACTCACTGTCTTATGCCCTTGGAGCTGGATCCCTCTTTGATGTTTCAGAGGATTCT GACTATGTTCATACACTTCTTGCTAAAGCTATAGATGAGTATGCTAGCCTAAAGTCTAAGGCAGCTGAATCAAATGCTGATGGAGCAGATGTGGACCCAA GGTTAGAGGCAATTGTGGAGAGACTGCTGGACAAGTGCATCATGGATGGAAAGTACCAACAAGCTATGGGAATTGCAATTGAATGCCGTAGATTGGATAA ACTCGAGGAAGCTATCATGAAGAGTGATAATGTGCAGGGAACTCTTTCCTATTGCATTAATGTTTCTCATTCATATGTTAACCGTAGAGAGTATCGGCAA GAGGTCCTCCAGCTTCTTGTTAAAGTATATCAAAAGCTGCCTTCTCCTGATTATTTGAGCATTTGTCAGTGTTTGATGTTCTTGGATGAGCCTGAAGGTG TAGCTAGCATATTAGAAAAACTTCTACGCTCAGGAAATAAGGATGAAGCTTTGTTGGCATTTCAAATAGCTTTTGATCTTGTGGAGAACGAGCACCAGGC TTTTCTTCTAAATGTTAGAGACCGTCTTTCACCTCCAAAGTCTCAAGTTTCAGAGCCAGCACTGCCAAAATCCACAGCTCCAGATTCATCTCAAAATGAA AATTCTAGTGCTCCAGAAGATGTTCAAATGACAGAAGGAACTTCATCTTCTACAGTGCATGAAATAGATCCAAGTGAAGCAGTGTATGCTGAGAGGCTGA CAAAAATCAAAGGAATTTTGTCTGGGGAGACATCTATACAGCTGACTCTGCAATTCCTATATAGTCATAATAAGTCGGACCTCCTTATTCTGAAGACAAT TAAGCAATCAGTTGAGATGAGAAATAGTGTCTGCCACAGTGCAACTATTTATGCTAATGCAATTATGCATGCTGGAACAACTGTGGATACATTTCTCAGG GAAAATCTAGATTGGTTGAGTAGGGCCACAAATTGGGCCAAATTTAGTGCAACAGCAGGTCTTGGTGTCATCCATAGAGGCCACTTGCAGCAGGGCAGGT CACTGATGGCCCCTTATTTGCCTCAAGGTGGTGCTGGTGGCGGAGGTAGTCCATACTCAGAAGGTGGTGCCCTCTATGCTCTGGGACTCATTCATGCCAA CCATGGCGAGGGCATAAAACAATTCCTTCGTGAAAGCTTACGTAGCACCAGTGTGGAGGTTATTCAACATGGTGCATGTTTAGGTCTTGGTTTGGCAGCT CTTGGAACAGCCGACGAAGATATCTTTGATGACATTAAAAGTGCATTGTATACTGATAGCGCTGTTGCTGGTGAAGCTGCTGGTATCAGTATGGGTTTGC TTATGGTTGGGACTGCAAGTGAGAAAACTAGTGAGATGCTTGCATATGCGCATGATACCCAACACGAGAAAATCATCAGGGGATTAGCATTGGGGATAGC CCTTACAGTTTATGGAAGAGAAGAAGAAGCAGACACGCTAATCGAGCAGATGACTCGTGATCAAGATCCTATACTTCGTTATGGTGGCATGTATGCCTTG GCATTGGCCTACAGTGGAACAGCAAACAACAAGGCTATTCGCCAGTTGCTGCACTTTGCTGTATCAGATGTGAGTGATGATGTCAGGAGGACTGCTGTTC TTGCACTTGGATTTGTCTTGTACTCCGAGCCAGAGCAGACTCCTCGAATTGTGTCCTTGCTTTCAGAGTCTTATAATCCACATGTACGATATGGTGCTGC TCTTGCAGTTGGCATCTCCTGTGCAGGCACTGGCTTGAGTGAGGCTATATCATTGCTAGAACCTTTGACGTCAGATGTTGTTGATTTTGTTCGTCAAGGT GCTCTCATTGCAATGGCTATGGTCATGGTCCAGATGAATGAAGCCAGTGATTCTCGTGTTGGAACATTCAGACGGCAATTGGAAAAGATAATTCTAGATA AGCATGAAGACACAATGAGCAAGATGGGAGCAATCCTTGCTTCCGGAATACTTGATGCTGGTGGTAGGAATGTGACTATAAGATTGCTTTCTAAGACAAA GCATGATAAAATCACTGCTGTTGTTGGCCTTGCTGTTTTTAGCCAATTTTGGTACTGGTATCCACTTATCTATTTCATAAGCTTGGCATTCTCACCCACA GCTTTTATTGGCCTCAACTATGACTTGAAAGTTCCAAAATTTGAGTTTGTATCAAATGCAAAGCCATCTCTGTTTGAGTATCCAAAACCAACCACTGTGC CTACTGCAACATCTGCTGTGAAACTTCCTGCCGCAGTTCTGTCAACATCGGTGAAGGCCAAAGCTAGGGCCAAGAAAGAAGCAGATCAGAAAGCTACTGC TGAAAAGGCAGCTGGAGTGGAGTCTTCACCTGCTTCAACTAGTGCTGGAAAAGGAAAAGCGCCCAGTGAGAAGGATGGGGATGCTATGCAGGTTGATGGA CAACCAGAGAAGAAAGCAGAGCCTGAGCCTTCTCATGAAATTTTGACGAACCCAGCCAGGGTTGTTCCTGCCCAGGAGAAATTTATTAAATTTATGGAAG ACAGCAGATATGTGCCAGTGAAGTCAGCACCTTCAGGGTTTGTTCTCTTGAGAGACCTGCAACCAACTGAACCTGAGGTGCTTTCTCTTACAGATACACC ATCATCTGCAGCATCACCAGCTAGTGGTTCAACCACAGGACAGCAAAGTTCAGCATCAGCCATGGCCGTTGACGAGGAACCCCAGCCTCCACAGCCTTTC GAGTACACCTCATAA
AA sequence Show only first row Show all	>Potri.001G314300.1 pacid=42788582 polypeptide=Potri.001G314300.1.p locus=Potri.001G314300 ID=Potri.001G314300.1.v4.1 annot-version=v4.1 MATTMVSSAGGLLAMLNESHPLLKQHALYNLNNLVDQFWPEISTSVPIIESLYEDDEFDLHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDS DYVHTLLAKAIDEYASLKSKAAESNADGADVDPRLEAIVERLLDKCIMDGKYQQAMGIAIECRRLDKLEEAIMKSDNVQGTLSYCINVSHSYVNRREYRQ EVLQLLVKVYQKLPSPDYLSICQCLMFLDEPEGVASILEKLLRSGNKDEALLAFQIAFDLVENEHQAFLLNVRDRLSPPKSQVSEPALPKSTAPDSSQNE NSSAPEDVQMTEGTSSSTVHEIDPSEAVYAERLTKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLR ENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRESLRSTSVEVIQHGACLGLGLAA LGTADEDIFDDIKSALYTDSAVAGEAAGISMGLLMVGTASEKTSEMLAYAHDTQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYAL ALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQG ALIAMAMVMVQMNEASDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLAVFSQFWYWYPLIYFISLAFSPT AFIGLNYDLKVPKFEFVSNAKPSLFEYPKPTTVPTATSAVKLPAAVLSTSVKAKARAKKEADQKATAEKAAGVESSPASTSAGKGKAPSEKDGDAMQVDG QPEKKAEPEPSHEILTNPARVVPAQEKFIKFMEDSRYVPVKSAPSGFVLLRDLQPTEPEVLSLTDTPSSAASPASGSTTGQQSSASAMAVDEEPQPPQPF EYTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32730			26S proteasome regulatory comp...		Potri.001G314300 [exp]	0	1
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Potri.017G014800 [exp]	3.60	0.7075
AT2G24420			DNA repair ATPase-related (.1....		Potri.018G003700 [exp]	5.91	0.6890
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Potri.010G001400 [exp]	7.41	0.6691
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.019G051500 [exp]	10.58	0.6511
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Potri.007G137200 [exp]	13.85	0.6963
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Potri.015G040300 [exp]	14.69	0.6274	MPK8.2
AT1G45000			AAA-type ATPase family protein...		Potri.002G031400 [exp]	18.22	0.6930	RPT4.2
AT4G38510			ATPase, V1 complex, subunit B ...		Potri.004G177500 [exp]	18.70	0.7041
AT2G45060			Uncharacterised conserved prot...		Potri.014G058700 [exp]	30.80	0.6625
AT4G24820			26S proteasome, regulatory sub...		Potri.012G093500 [exp]	31.62	0.6730

Compare expression of checked genes

Potri.001G314300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.