Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24140 398 / 4e-137 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G72210 153 / 4e-43 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 149 / 1e-41 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G06120 145 / 2e-41 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46810 141 / 4e-38 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 130 / 2e-34 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G01460 129 / 4e-34 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46690 120 / 1e-30 bHLH bHLH071 beta HLH protein 71 (.1) AT5G65320 103 / 6e-25 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G53210 91 / 6e-20 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G054500 [exp] 618 / 0 AT3G24140 344 / 8e-116 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G025900 [exp] 176 / 1e-51 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G039800 [exp] 170 / 4e-49 AT1G72210 231 / 5e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G101900 [exp] 166 / 1e-47 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G202900 [exp] 154 / 1e-44 AT3G06120 250 / 5e-85 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G106300 [exp] 158 / 3e-44 AT2G46810 247 / 9e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G180300 [exp] 147 / 4e-40 AT2G46810 228 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G093200 [exp] 144 / 7e-40 AT5G46690 191 / 8e-59 beta HLH protein 71 (.1) Potri.001G141100 [exp] 142 / 2e-39 AT5G46690 222 / 6e-71 beta HLH protein 71 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007139 [exp] 303 / 1e-99 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016680 [exp] 291 / 4e-94 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029950 [exp] 155 / 2e-43 AT1G72210 226 / 4e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000332 [exp] 155 / 3e-43 AT1G22490 221 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010101 [exp] 142 / 2e-40 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012603 [exp] 129 / 2e-35 AT2G46810 202 / 4e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007138 [exp] 128 / 2e-35 AT3G24140 124 / 2e-34 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034031 [exp] 128 / 2e-34 AT3G06120 225 / 8e-75 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001066 [exp] 130 / 4e-34 AT5G53210 268 / 9e-88 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010503 [exp] 126 / 1e-33 AT3G06120 191 / 4e-61 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G314400.1 pacid=42790894 polypeptide=Potri.001G314400.1.p locus=Potri.001G314400 ID=Potri.001G314400.1.v4.1 annot-version=v4.1 ATGGATAAAGAAGAGAATTACTCGGGAAGTTTTACTGAGCTAGATTACTCTCTAGATCATCATCATCAACAACAAGACCACCTTGGACTCATGAAGCAGC GGATAGGTGGAACTTCTGGTGATGATGATTGCAACAACGGGATGATTGATTATATGCTCAATAATCCTCAACAACATCAACAACAAATGTCATCCGGGTT TTGCACTTCTACTTCTTTCGATAAATTGAGCTTTGCTGATGTGATGCAATTTGCAGATTTTGGGCCTAAGTTGGCCTTAAATCAAAACAAGATATCGGAG GAAGAAACTGGGATTGATCCGGTTTACTTCCTTAAGTTTCCTGTTTTGAATGATAAGATTGAGGAACAATCTATAAGGGTTCCTCAACTAGGTGGAGAAA ATATTGAAGAAATGTTTACAGGAGTGAGTAGTGGGGAGAATAGGGCAGGAATGGTGGGGGAAGAGAGGGGTATTGGAGAAGATGAAGAAGCTAGGATTTC GGATAACAACTCGGTGCAACTTCAGTTTCTTGGAGATCAAGATCTTCAAAACAAGAACCCTATACCAGAGGCGAAGAACAAGAGAAAAAGGCCAAGAACT ATCAAGACAAGTGAGGAAGTTGAGAGCCAAAGAATGACTCATATTGCAGTTGAAAGAAATCGAAGAAAGCAAATGAATGAGCATCTTCGAGTCTTGAGGT CTCTCATGCCAGGATCATATGTGCAACGGGGAGATCAAGCTTCGATAATTGGTGGAGCCATAGAGTTTGTGAGAGAATTGGAGCAACTACTTCAGTGCCT AGAATCCCAGAAACGGCGAAGACTGATGGATGATTCCTCTCTTGCAATCCAACAACCAGCTCAGCCTGCATTCTTTTCTCCTATGCCTCTACCAAATGAT CAAATGAAGCTCGTGGACTTCGAGACCGGACTCCGTGAAGAAACAGCTGAAAACAAGTCTTGCTTGGCTGATGTTGAAGTAAAGCTTTTAGGGTTTGATG CCATGATCAAGATCCTGTCTAGGAGAAGGCCAGGCCAGCTCATTAAGGCCATTGCAGCACTAGAAGATTTGCAGCTTAACATACTCCACACCAACATCAC CACCATTGATCAAACTGTTCTCTATTCATTTAATGTCAAAATTGCAAGTGACTCTGGGTTTACAGCAGAAGATATAGCAAGCTCAGTTCAACAGATATTC AATTTCATCCATGCAAATAGCAGCATTTGA
AA sequence Show only first row Show all	>Potri.001G314400.1 pacid=42790894 polypeptide=Potri.001G314400.1.p locus=Potri.001G314400 ID=Potri.001G314400.1.v4.1 annot-version=v4.1 MDKEENYSGSFTELDYSLDHHHQQQDHLGLMKQRIGGTSGDDDCNNGMIDYMLNNPQQHQQQMSSGFCTSTSFDKLSFADVMQFADFGPKLALNQNKISE EETGIDPVYFLKFPVLNDKIEEQSIRVPQLGGENIEEMFTGVSSGENRAGMVGEERGIGEDEEARISDNNSVQLQFLGDQDLQNKNPIPEAKNKRKRPRT IKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLMDDSSLAIQQPAQPAFFSPMPLPND QMKLVDFETGLREETAENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIDQTVLYSFNVKIASDSGFTAEDIASSVQQIF NFIHANSSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Potri.001G314400 [exp]	0	1
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Potri.017G054500 [exp]	1.00	0.9631
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125100 [exp]	2.44	0.9596
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Potri.018G054400 [exp]	4.47	0.9335
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.010G068100 [exp]	4.47	0.9260
AT5G50160		ATFRO8, FRO8	ferric reduction oxidase 8 (.1...		Potri.012G084800 [exp]	5.09	0.9072
AT4G22980			unknown protein		Potri.001G111600 [exp]	5.47	0.9202
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Potri.013G144300 [exp]	7.48	0.9213	10,Pt-DFL2.2
AT4G14480			Protein kinase superfamily pro...		Potri.008G163800 [exp]	7.48	0.9281
AT2G34960		CAT5	cationic amino acid transporte...		Potri.003G154600 [exp]	8.48	0.9231	CAT5.1
AT2G44930			Plant protein of unknown funct...		Potri.012G012500 [exp]	10.39	0.9267

Compare expression of checked genes

Potri.001G314400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.