Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPL13.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48760 384 / 5e-138 Ribosomal protein L13 family protein (.1.2) AT3G24830 383 / 2e-137 Ribosomal protein L13 family protein (.1) AT3G07110 382 / 3e-137 Ribosomal protein L13 family protein (.1.2) AT4G13170 382 / 6e-137 Ribosomal protein L13 family protein (.1) AT1G78630 54 / 9e-09 EMB1473 embryo defective 1473, Ribosomal protein L13 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G054600 [exp] 407 / 7e-147 AT5G48760 351 / 5e-125 Ribosomal protein L13 family protein (.1.2) Potri.002G242600 [exp] 377 / 3e-135 AT4G13170 357 / 4e-127 Ribosomal protein L13 family protein (.1) Potri.001G384600 [exp] 49 / 4e-07 AT1G78630 351 / 1e-123 embryo defective 1473, Ribosomal protein L13 family protein (.1) Potri.011G106100 [exp] 49 / 7e-07 AT1G78630 342 / 3e-120 embryo defective 1473, Ribosomal protein L13 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007137 [exp] 390 / 3e-140 AT5G48760 384 / 6e-138 Ribosomal protein L13 family protein (.1.2) Lus10016679 [exp] 390 / 4e-140 AT5G48760 386 / 9e-139 Ribosomal protein L13 family protein (.1.2) Lus10043151 [exp] 387 / 4e-139 AT5G48760 380 / 2e-136 Ribosomal protein L13 family protein (.1.2) Lus10032599 [exp] 387 / 4e-139 AT5G48760 380 / 2e-136 Ribosomal protein L13 family protein (.1.2) Lus10011857 [exp] 383 / 1e-137 AT5G48760 394 / 8e-142 Ribosomal protein L13 family protein (.1.2) Lus10022793 [exp] 380 / 3e-136 AT5G48760 390 / 2e-140 Ribosomal protein L13 family protein (.1.2) Lus10005553 [exp] 47 / 5e-06 AT1G78630 332 / 8e-116 embryo defective 1473, Ribosomal protein L13 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00572 [poplar] [flax] Ribosomal_L13 Ribosomal protein L13
Representative CDS sequence Show only first row Show all	>Potri.001G314500.1 pacid=42792439 polypeptide=Potri.001G314500.1.p locus=Potri.001G314500 ID=Potri.001G314500.1.v4.1 annot-version=v4.1 ATGGTGTCTGGGTCAGGGATCTGTGCAAAAAGAATTGTTGTTGATGCAAGGCATCATATGCTAGGCAGGCTTGCATCAATACTTGCTAAAGAGCTACTAA ATGGGCAGAAAGTTGTTGTTGTTAGGTGTGAAGAGATTTGTATCTCTGGTGGTTTAGTAAGGCAGAAAATGAAGTACCTAAGGTTCTTGAGGAAACGCAT GAACACTAAGCCTTCTCATGGTCCTATTCACTTCAGGGCTCCTTCCAAGATTCTCTGGCGTACCATTAGAGGGATGATTCCTCACAAGACCAAGCGTGGA GAGGCTGCTCTTGCTCGTTTGAAGGTTTTTGAGGGTGTTCCTCCTCCATATGATAAGACAAAGAGGATGGTGATCCCTGATGCTCTCAAGGTTTTGAGGC TCCAGCCTGGACACAAGTATTGCTTGTTAGGACAGCTTTCATCTGAGGTTGGATGGAACCACTATGATACCATCAAGGAGCTTGAGATGAAGAGAAAGGA AAGAGCCCAGTTGATCTATGAGAGAAAGAAGCAGCTGGCAAAACTGAGGGTTAAGGCTGAGAAGACTGCAGAGGAGAAGCTTGGTCCCCAGCTAGACATC ATTGCTCCACTCAAATATTGA
AA sequence Show only first row Show all	>Potri.001G314500.1 pacid=42792439 polypeptide=Potri.001G314500.1.p locus=Potri.001G314500 ID=Potri.001G314500.1.v4.1 annot-version=v4.1 MVSGSGICAKRIVVDARHHMLGRLASILAKELLNGQKVVVVRCEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRG EAALARLKVFEGVPPPYDKTKRMVIPDALKVLRLQPGHKYCLLGQLSSEVGWNHYDTIKELEMKRKERAQLIYERKKQLAKLRVKAEKTAEEKLGPQLDI IAPLKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48760			Ribosomal protein L13 family p...		Potri.001G314500 [exp]	0	1	RPL13.1
AT3G11940		AML1, ATRPS5A	ARABIDOPSIS MINUTE-LIKE 1, rib...		Potri.006G197700 [exp]	2.00	0.9686	RPS5.2
AT1G07070			Ribosomal protein L35Ae family...		Potri.010G199400 [exp]	3.00	0.9520
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.012G024300 [exp]	3.87	0.9615	Pt-UBQ1.2
AT3G52580			Ribosomal protein S11 family p...		Potri.009G019400 [exp]	4.58	0.9628
AT4G15000			Ribosomal L27e protein family ...		Potri.006G021500 [exp]	4.69	0.9501	Pt-RPL27.2
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Potri.004G202832 [exp]	5.65	0.9660
AT4G36130			Ribosomal protein L2 family (....		Potri.005G115700 [exp]	7.74	0.9599	RPL2.2
AT5G61170			Ribosomal protein S19e family ...		Potri.017G092200 [exp]	8.48	0.9530	Pt-RPS19.2
AT3G02560			Ribosomal protein S7e family p...		Potri.004G099200 [exp]	10.00	0.9620
AT1G70600			Ribosomal protein L18e/L15 sup...		Potri.010G045800 [exp]	10.39	0.9497

Compare expression of checked genes

Potri.001G314500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.