Plant FIBer expression Database

Potri.001G314700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G04900 682 / 0 Protein of unknown function (DUF185) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016677
[exp]
605 / 0 AT1G04900 574 / 0.0 Protein of unknown function (DUF185) (.1)
Lus10007135
[exp]
576 / 0 AT1G04900 532 / 0.0 Protein of unknown function (DUF185) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF02636 Methyltransf_28 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence
>Potri.001G314700.1 pacid=42788507 polypeptide=Potri.001G314700.1.p locus=Potri.001G314700 ID=Potri.001G314700.1.v4.1 annot-version=v4.1
ATGTTCACTCGCTCCCCAACAACCAAAAAGTTATTCTTTTTCTTTCGTTCACACAAATCCCACTTCTCCACTAACATTGTTGGTGAAAAACCAGTCCTTG
TGAGAGATTTTATACATTCTGCACTATATGATCCAAAACATGGGTACTTCTCTCAAAGATCAAGGTCCGTTGGAGTTCTTGAGAGAAGCATTAGGTTCAA
TCAACTTGAAGGAAGAAAAGCTTATATGAACCACTTGGATAAAATTTACAAGAGGAGTGACATCTCATGGTTTACTCCAGTAGAGCTTTTTAAGCCTTGG
TATGCCCATGGAATTGCTGAAGCCATAATGCGTACATCACAACTTTCTGTTCCACTACAAATATATGAAATTGGTGGTGGATCAGGAATTTGTGCAAAGG
GCATTCTAGACTACATAATGTTGAATGCACCTGCCAGAATATACAACAACATGACTTACACCTCAGTGGAAATCAGTCCCTCTCTGGCTGAAATACAAAA
AGAAACTGTAGGAGAAGTTCGTAGTCACTTGTCAAAGTTTAGAGTAGAATGTCGTGATGCTGCTGACAGGAGTGGATGGGGGGATATCAAGCAACAACCA
TGTTGGGTGATCATGCTGGAGGTTCTCGATAATCTTCCACATGATCTTGTCTATTCAGAAAATCAGGTTTTCCCATGGAAAGAAGTATGGGTTGAGAAGC
AACATGATAAGGAATCACTCTTTGAGCTGTACAAGCCACTAGAAGACCCATTAATTAAGCGTTGTGTTGAGATCGTGGAACTGGGCAAAAATCAGTCCGT
GTCAATAGCAAAAAGTGTTTGGTCTAAGGTCTTCCCAAAACCTCGAAGATGTTGGCTCCCAACTGGTTGCTTGAAACTGCTAGATGTGTTACATGAGGTA
TTACCAAGGATGTCCTTAATTGCTTCAGACTTTAGTTACCTACCTGATGTGAGTATACCTGGTGAAAGGGCTCCTTTAGTTTCAACCAAGAAAGATGGCC
GCAGCTTAGATTACAACAGTTATCTGGACACAAAGGGTGATGCTGATATTTTTTTTCCCACGGACTTTTGGCTTTTGGAACGAATGGACCATTACTGCTC
TGGGTGGATGAAACCGCATGGGGATAACTCAACCAAGCAAGGGAAGAAGAGGCGAACACTAGTGCTCGATACATCAGCATTCATGGAAGAGTTTGGTTTG
CCCTCCAAGACGAGAACCAAGGATGGATACAACCCACTTCTGGATGATTTCAAGAATACCAAATTTTATCTTAGTGTCCCAACTCATAACATAAAATAG
AA sequence
>Potri.001G314700.1 pacid=42788507 polypeptide=Potri.001G314700.1.p locus=Potri.001G314700 ID=Potri.001G314700.1.v4.1 annot-version=v4.1
MFTRSPTTKKLFFFFRSHKSHFSTNIVGEKPVLVRDFIHSALYDPKHGYFSQRSRSVGVLERSIRFNQLEGRKAYMNHLDKIYKRSDISWFTPVELFKPW
YAHGIAEAIMRTSQLSVPLQIYEIGGGSGICAKGILDYIMLNAPARIYNNMTYTSVEISPSLAEIQKETVGEVRSHLSKFRVECRDAADRSGWGDIKQQP
CWVIMLEVLDNLPHDLVYSENQVFPWKEVWVEKQHDKESLFELYKPLEDPLIKRCVEIVELGKNQSVSIAKSVWSKVFPKPRRCWLPTGCLKLLDVLHEV
LPRMSLIASDFSYLPDVSIPGERAPLVSTKKDGRSLDYNSYLDTKGDADIFFPTDFWLLERMDHYCSGWMKPHGDNSTKQGKKRRTLVLDTSAFMEEFGL
PSKTRTKDGYNPLLDDFKNTKFYLSVPTHNIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G04900 Protein of unknown function (D... Potri.001G314700
[exp]
0 1
AT5G51920 Pyridoxal phosphate (PLP)-depe... Potri.001G056400
[exp]
3.46 0.7765
AT4G24530 O-fucosyltransferase family pr... Potri.002G105800
[exp]
8.66 0.7562
AT2G47960 unknown protein Potri.004G040500
[exp]
11.66 0.6654
AT3G08950 HCC1 homologue of the copper chaper... Potri.016G118700
[exp]
13.26 0.7434
AT3G13300 VCS VARICOSE, Transducin/WD40 repe... Potri.011G166400
[exp]
13.41 0.7359 Pt-VCS.2
AT3G62800 DRB4 double-stranded-RNA-binding pr... Potri.019G038100
[exp]
20.73 0.7009
AT1G55900 TIM50, EMB1860 embryo defective 1860, Haloaci... Potri.011G093000
[exp]
22.00 0.6946 TIM50.1
AT2G17270 PHT3;3 phosphate transporter 3;3 (.1) Potri.005G098800
[exp]
23.81 0.6198
AT2G34580 unknown protein Potri.004G132600
[exp]
26.07 0.7143
AT5G66960 Prolyl oligopeptidase family p... Potri.007G035900
[exp]
26.49 0.7269

Potri.001G314700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.