Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24110 216 / 8e-71 Calcium-binding EF-hand family protein (.1) AT4G26470 182 / 3e-57 Calcium-binding EF-hand family protein (.1.2) AT4G09570 50 / 4e-07 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT4G04700 49 / 1e-06 CPK27 calcium-dependent protein kinase 27 (.1) AT1G35670 49 / 1e-06 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT2G41100 48 / 2e-06 ATCAL4, TCH3 TOUCH 3, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, Calcium-binding EF hand family protein (.1.2.3.4) AT2G17290 48 / 3e-06 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT4G37010 45 / 9e-06 CEN2 centrin 2 (.1.2) AT5G04870 46 / 1e-05 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT4G35310 45 / 4e-05 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471100 [exp] 201 / 1e-64 AT4G26470 331 / 3e-116 Calcium-binding EF-hand family protein (.1.2) Potri.010G244800 [exp] 51 / 3e-07 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.001G257100 [exp] 49 / 2e-06 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.019G083200 [exp] 48 / 3e-06 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1) Potri.016G065700 [exp] 47 / 5e-06 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.008G014700 [exp] 46 / 1e-05 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.004G207300 [exp] 46 / 1e-05 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.013G112500 [exp] 45 / 2e-05 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.016G066700 [exp] 45 / 2e-05 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016675 [exp] 292 / 7e-100 AT3G24110 203 / 2e-65 Calcium-binding EF-hand family protein (.1) Lus10008357 [exp] 157 / 2e-47 AT4G26470 290 / 6e-100 Calcium-binding EF-hand family protein (.1.2) Lus10007131 [exp] 121 / 1e-34 AT3G24110 76 / 2e-25 Calcium-binding EF-hand family protein (.1) Lus10027114 [exp] 82 / 4e-19 AT4G26470 165 / 6e-52 Calcium-binding EF-hand family protein (.1.2) Lus10025570 [exp] 53 / 1e-07 AT2G31500 768 / 0.0 calcium-dependent protein kinase 24 (.1) Lus10027032 [exp] 52 / 1e-07 AT2G31500 765 / 0.0 calcium-dependent protein kinase 24 (.1) Lus10039623 [exp] 50 / 7e-07 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10028862 [exp] 50 / 1e-06 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10008958 [exp] 49 / 1e-06 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10029547 [exp] 48 / 3e-06 AT1G35670 790 / 0.0 calcium-dependent protein kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.001G314900.1 pacid=42790227 polypeptide=Potri.001G314900.1.p locus=Potri.001G314900 ID=Potri.001G314900.1.v4.1 annot-version=v4.1 ATGAAAGATTCACTTGGAACTTCTCAACCTTGCCCTTCTTTGAAGTCCTTGACATCCAAACTAGGAGGGATGTTTTGCCATTGCGGATCACCAAACAAAT ATAAGAGGTTGGATGCAAAGCTTGAAAAGAAGCTGATTGAACTCAAGAGAAGTTCATCTGGGAAGACGAATTTTAAATCAATGAATAGTATAATCATGAG GTTTCCCCAGTTTAAAGAAGAACTGAAACACATCAGAGGGGTATTCGAACAGTATGATGAAGATGCAAATGGTAATATTGACATGGAGGAACTAAAAAAA TGCTTACAAAATCTGCAACTCAATTTAAAAGAGGAGGAAGTTGAGGATCTATTCCACTCCTGCGACATTGATCAAAGCGAGGGGATACAATTCAATGAGT TCATTGTTCTTCTATGTCTCATCTATCTCCTAGTAGAGCATTCATCCTCTCCACTGAGAACGTCAAAGATGGGTTCACCTGAGCTTGAGGCCACTTTTGA TACAATAGTTAAAGCATTCTTATTTCTGGATAAGAATGGAGCTGGCAAGCTGAACAAAAAGGACATGATCAAAGCATTGAATGAGGATTCTCCATGGGAG AAATCCCCGGCACATATCACTAGATCTAGATTCAAAGAAATGGACTGGGACAGGAATGGGAAGGTCAGTTTCAGGGAGTTCCTCTTTTCTTTAATCAACT GGATCGGGATTGATGCTGATGAAGATATTCCTGTGAGCACAAGAACTTGA
AA sequence Show only first row Show all	>Potri.001G314900.1 pacid=42790227 polypeptide=Potri.001G314900.1.p locus=Potri.001G314900 ID=Potri.001G314900.1.v4.1 annot-version=v4.1 MKDSLGTSQPCPSLKSLTSKLGGMFCHCGSPNKYKRLDAKLEKKLIELKRSSSGKTNFKSMNSIIMRFPQFKEELKHIRGVFEQYDEDANGNIDMEELKK CLQNLQLNLKEEEVEDLFHSCDIDQSEGIQFNEFIVLLCLIYLLVEHSSSPLRTSKMGSPELEATFDTIVKAFLFLDKNGAGKLNKKDMIKALNEDSPWE KSPAHITRSRFKEMDWDRNGKVSFREFLFSLINWIGIDADEDIPVSTRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24110			Calcium-binding EF-hand family...		Potri.001G314900 [exp]	0	1
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.010G136900 [exp]	17.88	0.6319
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.014G075901 [exp]	18.92	0.6575
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Potri.004G214000 [exp]	23.06	0.6331
AT4G18930			RNA ligase/cyclic nucleotide p...		Potri.011G075600 [exp]	24.12	0.6374
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.013G028300 [exp]	29.18	0.6533	Pt-HPT2.2
AT5G28910			unknown protein		Potri.013G047600 [exp]	36.94	0.5483
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.014G145200 [exp]	43.24	0.5949
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Potri.017G001700 [exp]	45.13	0.5970
AT4G36470			S-adenosyl-L-methionine-depend...		Potri.007G021400 [exp]	53.38	0.5522
AT1G68585			unknown protein		Potri.015G053600 [exp]	54.89	0.6192

Compare expression of checked genes

Potri.001G314900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.