Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04880 377 / 6e-128 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G76110 245 / 4e-78 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT3G13350 212 / 2e-65 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G55650 186 / 3e-55 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G20910 55 / 6e-08 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1) AT2G17410 55 / 7e-08 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2) AT1G76510 50 / 3e-06 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) AT4G11080 46 / 3e-05 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055200 [exp] 630 / 0 AT1G04880 364 / 3e-122 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.011G168800 [exp] 254 / 7e-82 AT3G13350 307 / 3e-104 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.005G246700 [exp] 239 / 4e-76 AT1G76110 350 / 2e-120 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.011G145450 [exp] 59 / 4e-09 AT2G17410 423 / 3e-140 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.004G208900 [exp] 57 / 2e-08 AT2G17410 416 / 6e-137 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.002G003700 [exp] 54 / 9e-08 AT1G76510 451 / 5e-157 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.001G456500 [exp] 52 / 3e-07 AT2G17410 420 / 3e-139 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.001G093700 [exp] 45 / 7e-05 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007127 [exp] 428 / 9e-148 AT1G04880 376 / 3e-127 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10016671 [exp] 409 / 1e-140 AT1G04880 365 / 5e-123 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10021228 [exp] 231 / 1e-72 AT1G76110 375 / 4e-130 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10005636 [exp] 91 / 5e-20 AT1G76110 273 / 2e-90 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10001618 [exp] 57 / 2e-08 AT2G17410 395 / 4e-129 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10022981 [exp] 56 / 4e-08 AT2G17410 395 / 1e-128 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10023091 [exp] 49 / 2e-06 AT4G11080 279 / 1e-92 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10033954 [exp] 49 / 5e-06 AT4G11080 283 / 5e-91 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10016045 [exp] 48 / 1e-05 AT1G76510 374 / 1e-126 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10032379 [exp] 46 / 3e-05 AT4G11080 481 / 1e-167 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [poplar] [flax] HMG-box PF00505 [poplar] [flax] HMG_box HMG (high mobility group) box CL0123 [poplar] [flax] HTH PF01388 [poplar] [flax] ARID ARID/BRIGHT DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G315200.3 pacid=42792015 polypeptide=Potri.001G315200.3.p locus=Potri.001G315200 ID=Potri.001G315200.3.v4.1 annot-version=v4.1 ATGGCATCAACTTCTTGTGCTAAGCAGAGTCCACTGCCCATGAGAGAACCAGTTATGAGCTATGTTCAATATCCAGCACCTGGGGCCACATATGAGGATG TTATAGTTAGCACTAAGCTTTTTATGGAAACTTTGGAGAAGTTTCATGCAGCCATGGGAACCAAGTTCATGATCCCTATTATAGCGGGCAAGGAACTGAA CTTGCATCGGCTTTTTGTGGAGGTGACGTCTCGTGGTGGTATTGAGAAGATTATTAGAGAGAAAAGATGGAAAGAAGTGACTTCTGTTTTCAACTTTCCA TCTACGGCCACAAATGCATCTTTCGTGCTGCGCAAGTACTATGGTTCCTTGCTTCAACACTATGAACAGCTTTACTACTTTAAGGCTCGGAGTTGGAGCC CTGTCTCTCCTGTTCCTTTGCAGAGTCCATTGATATCACAATGTTCAGCTCACGTGACTGTGCAGCCGTCACCAGAATACCAAGCTGCTGCAGTCAAGCA AAAAAACACAAACACTGCAGAGTTGCGTGGAGTTGTAGCAATGCCAGGATCATCTGCAAGTCCTCCAGTGGTGGGGGTAATTGATGGGAAATTTGAGGGT GGGTATCTTGTTACTGTCACGGTAGGTTCAGAGAAGCTCAAAGGTGTTCTTTATCAGGCACCACAGAACCAATCATGGCCAGTGCCGCAGCCTCATGGTG TGTCTGCCAACAATAGTTTTAATACAAACCCTGTACCATCCGCCAGGAATAGTGGTAATACACACCCAGTACCAGGTACACGACGCCGGCGCCGTAGAAA GAAAAGTGAGATAAAAAGAAGGGACCCCGCTCATCCAAAACCTAACAGAAGCGGCTACAATTTCTTCTTTTCTGAGCAGCATGCAAGACTCAAACCACTT TACCCAGGGAAGGATAGAGAGATCAGTAGGATGATTGGTGAGCTATGGAACAAAATAAATGATTCTCAGAAAGCGGTTTATCAGGAAAAAGCTCTTAGAG ATAAAGAAAGATACAAAATAGAAATGGAGGGTTATCGAGAGAGATTGAGAACGGGGAAAGTTATTATTGACGCAGTTCCACTGCAGCAGTGGATACCAGG TAAAGATTCTGAGATGGTGGAAGCAAGTGTCAGAACTGAGGAAACTGGAGGGGGGTCTCTTCAGAATGATGGCAGTTCCAGTGAAAGTGATTCTGAGGAT GATGATAGAACTGCAGAAAAAGATTCGGACATGGAAGCTTCTCCAGTATAG
AA sequence Show only first row Show all	>Potri.001G315200.3 pacid=42792015 polypeptide=Potri.001G315200.3.p locus=Potri.001G315200 ID=Potri.001G315200.3.v4.1 annot-version=v4.1 MASTSCAKQSPLPMREPVMSYVQYPAPGATYEDVIVSTKLFMETLEKFHAAMGTKFMIPIIAGKELNLHRLFVEVTSRGGIEKIIREKRWKEVTSVFNFP STATNASFVLRKYYGSLLQHYEQLYYFKARSWSPVSPVPLQSPLISQCSAHVTVQPSPEYQAAAVKQKNTNTAELRGVVAMPGSSASPPVVGVIDGKFEG GYLVTVTVGSEKLKGVLYQAPQNQSWPVPQPHGVSANNSFNTNPVPSARNSGNTHPVPGTRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFSEQHARLKPL YPGKDREISRMIGELWNKINDSQKAVYQEKALRDKERYKIEMEGYRERLRTGKVIIDAVPLQQWIPGKDSEMVEASVRTEETGGGSLQNDGSSSESDSED DDRTAEKDSDMEASPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04880	ARID		HMG (high mobility group) box ...		Potri.001G315200 [exp]	0	1
AT5G65360			Histone superfamily protein (....		Potri.003G208800 [exp]	9.69	0.8708
AT1G73240			unknown protein		Potri.003G213050 [exp]	13.19	0.8367
AT4G21530		APC4	anaphase promoting complex 4, ...		Potri.004G034900 [exp]	19.05	0.8294
AT4G18840			Pentatricopeptide repeat (PPR-...		Potri.001G108500 [exp]	19.36	0.8283
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Potri.002G151300 [exp]	25.49	0.8194	GA20ox2-1
AT2G16780		MSI02, NFC2, NF...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.009G135100 [exp]	31.81	0.8013	NFC903,Pt-MSI2.1
AT4G31830			unknown protein		Potri.018G106300 [exp]	32.01	0.8339
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.010G072101 [exp]	34.20	0.7723
					Potri.005G038600 [exp]	44.42	0.8032
AT4G04980			unknown protein		Potri.011G047100 [exp]	44.47	0.7863

Compare expression of checked genes

Potri.001G315200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.