Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	UBP2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04860 479 / 1e-153 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1) AT2G32780 357 / 1e-106 ATUBP1 ubiquitin-specific protease 1 (.1) AT5G22030 87 / 3e-17 UBP8 ubiquitin-specific protease 8 (.1.2) AT2G24640 82 / 7e-16 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 80 / 4e-15 UBP18 ubiquitin-specific protease 18 (.1) AT1G32850 80 / 7e-15 UBP11 ubiquitin-specific protease 11 (.1) AT5G46740 76 / 9e-14 UBP21 ubiquitin-specific protease 21 (.1) AT4G10570 76 / 1e-13 UBP9 ubiquitin-specific protease 9 (.1) AT4G24560 75 / 2e-13 UBP16 ubiquitin-specific protease 16 (.1) AT4G10590 74 / 3e-13 UBP10 ubiquitin-specific protease 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055600 [exp] 1575 / 0 AT1G04860 524 / 1e-170 ubiquitin-specific protease 2 (.1) Potri.016G031900 [exp] 84 / 3e-16 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.018G009500 [exp] 83 / 5e-16 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 81 / 2e-15 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.002G104800 [exp] 81 / 5e-15 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.005G156900 [exp] 81 / 5e-15 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.006G033800 [exp] 79 / 1e-14 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.006G266100 [exp] 78 / 2e-14 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1) Potri.018G017000 [exp] 76 / 6e-14 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016664 [exp] 873 / 0 AT1G04860 669 / 0.0 ubiquitin-specific protease 2 (.1) Lus10016663 [exp] 846 / 0 AT1G04860 392 / 4e-120 ubiquitin-specific protease 2 (.1) Lus10007120 [exp] 652 / 0 AT1G04860 521 / 1e-172 ubiquitin-specific protease 2 (.1) Lus10007121 [exp] 173 / 2e-49 AT1G04860 125 / 2e-33 ubiquitin-specific protease 2 (.1) Lus10020116 [exp] 85 / 1e-16 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10026918 [exp] 84 / 4e-16 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10015893 [exp] 82 / 4e-16 AT4G24560 306 / 2e-95 ubiquitin-specific protease 16 (.1) Lus10009273 [exp] 83 / 7e-16 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10013369 [exp] 81 / 2e-15 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 81 / 3e-15 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00443 [poplar] [flax] UCH Ubiquitin carboxyl-terminal hydrolase CL0229 [poplar] [flax] RING PF02148 [poplar] [flax] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein
Representative CDS sequence Show only first row Show all	>Potri.001G315600.3 pacid=42793336 polypeptide=Potri.001G315600.3.p locus=Potri.001G315600 ID=Potri.001G315600.3.v4.1 annot-version=v4.1 ATGGGGAAAAGGGCTAATAAGAAAAAGACTCGGCCACTGCAGAAAGAGAAGCGGGTTGCTGGCCATTCTCCCAAGAGTGTGCCTCAACAAACAAATCTCA ATGTTGAAGATGTTGATGGGGTTACAGTAGTGAAAGAGAGAAAATTGTGTCCTCACTTTGACAAGGGTTTTGATGCAAACAAATTGTCAGAGAAAATTAG TTCTTCGGATTCTTTTAGGTGTGAGGATTGTCGAGAAGCTGTTGGTGATAGGAAGGGGGCTAAGGGGAAGGGTAAACAAGTTAAGAAGAAAGGAAGTGGT TCGGTTGATTCAAAGTCAGAGTCAAAAGCCATTTGGGTTTGTTTAGAATGTGGGCATTTAGCATGTGGAGGAATTGGCTTGCCAACAACTTCTCAGAGCC ATGCAGTTCGTCATTCCAAGCAGAACCGTCATCCTTTGGTCTTCCAATGGGAAAACCCTCAACTTCGATGGTGCTTCCCGTGCAATACTCTAATTCCTGC TGAGAAAACAGGGGAAAATGGTGAGAAAAAAGATGCAGTGTTTGAGGTTGTAAATATGATCAAGGCGCAATCGTCTAAAGAGTCATCGGCGGATGTTGAG GATGTGTGGTTTGGAAGAGGCAGTATTATTAGTGAACTTAATGCAGAAGGCACCATGACAATTGGCTTAGAGGGAAGAAGTGGTCATGTGGTGAGAGGCT TGGTTAATCTTGGGAACACTTGCTTCTTTAATTCAGTCATGCAGAATCTTCTAGCTATGAACAAGTTGCATGACCACTTCTCAAGTGAAGAGGCATCTTT TGGACCTTTATCAAGTTCTTTAAAGAAGCTATTCACTGATCTAAAAGCTGAGACTGGTTTTAGGAATGTAATCAATCCGAAATCCTTTTTTGGGTCAGTC TGTTCCAAGGCTCCCCAATTTAGGGGGTATCAGCAGCAAGATAGTCATGAATTGCTGCACTGCTTACTTGATGGGCTGTCTACTGAAGAGTTGACTGTTA GAAAGCGAAGAAATGCTTCTGAGGAAGATGGCATTCCTCCAAAACATGGTCCTACATTTGTGGATTCTGCTTTTGGGGGGCTGATTTCTAGCACTGTTTG TTGTGTAGAATGCGGGCACTCCTCAACCGTGCATGAGCCGTTTCTAGATCTCTCACTTCCAGTTCCAACTAAGAAACCTCCAACTAAAAAAGTCCAACCG GTCTCTCAAGCAAAGAAAACGAAGCTGCCTCCAAAGAGAGGGGGAAAGGTTCAGCCTAAGATTAACAGAAATACAGATTCAATGCCAGCTCAAAGTGTTT CAAAACCATCAGTCCAGAGTGATTCTCCATGCCAAACACAGTCAGCTGTGCCTCTCACAGAAAACACAGTAGCTTCTTCAGATAACATTCCAGCACCAGG TTCCACTGCCCCAACTACTGCGGTCGATGAAAGGGGCGAAGTTTCACAGAATTTGGCTGCTGTTATTGAATCTGATAGTAAGCAAGCTGTTGAGACTACA ATGGAGCAAATAGCAAGTTCATTTGATGACTTCTGGATGGATTATATTGGAGCAGAAACTACATCAGAGCATGATTTTGCTAAAGAAAACAATGTTCTTG CAGCAGGTCAGCAATGTGGAGACAAAGTTAATATTCCCAATGATGACTTGACAGAGACTTGCCAGGCTTCTTCAATTGATGGGGAGCCAAATAAAAAACC AGAATCTTCTTCTGTCAATCCTTGGGAAGAGGAGGTTCCATTACAGGTTCAAAGCTCGGAAGTTCTTTTGCTTCCATACAAAGAAGAGGGCTTTACTGAC AGGGAGATTATGAAAGGGGAATCTGAGGCTGGCTCATCTTTTGTGGGCTGCGGACAAGATGAAGCGGAATTTGATGGCATTGGTGACTTGTTCAATGAGC CTGAGGTTTCTGCAGCACCTGTTGCAGGGCCCTCATTAGGTAATGAGGTTGCTTTACCAAGTTTTATTGCAGGAATTAGCAGTGAGTCTGATCCGGATGA AGTTGATGATTCTGATTCTCCAGTGTCTTTAGAGAGTTGTTTGGCCCTTTTTATAAAGCCAGAACTTCTCTCAAATGATAATGCTTGGGAATGTGAGAAC TGTTCAAATATCCTGCGAGAGCAAAGGTTGGATGCAAAGAACAAGCAATCTAAAATATCTCCAAAAGCTTCAATAAATGGAGATGAGACTCAAATACAAA GTGATTCAGTGAGTTTAGACAAGAACATCTCATGCTCCACGGAGGTCGGAAGCTTTGAGGATGGAGATGCGATCCCTAATAACCTTTGCAACTCCACACC TGAAGTCTTTGTTTCAGGTAATGGCTGCTCAAATAAGAAATTCATACATGCTGAAATTGTTCAGACAGAGATGGAACCATTTATTTCTCAAAGTGAAGAA AGGAAATATGAGATGAATGTATCGCATAGTTCTGGTTGCTATGAATCATGTAATCGAGAAACTTTGAGTGGTCCACCTGTTGATTCTTGTAGTGTTGATG AGACAAGCAGTACTGGATATACCATGGCTAAAGATGAGCAGACTGACTGCAACTTCCCTGGCAATTGTGAATCAGATGTAAATGAAGATGGGGATAAAAC TTTAAAAAAACTGAATGTAAAGAGGGATGCAACTAAGAGGGTCCTTATTGATAAAGCACCACCTATTCTAACGGTTCATTTGAAGAGGTTCAGTCAAGAT GCTCGTGGTCGTTTAAGTAAATTGAATGGCCATGTTAACTTCCGAGATGTACTTGATCTTAGACCTTATATGGATCCCAGGTGTGTTGACACACAGAGTT ACGTGTATCGACTGCTTGGGGTGGTGGAGCATTCAGGAACAATGAGGGGAGGTCACTACATTGCATATGTCAGGGGAGATGCGAGGGGCAAAGGCAGGGC TGACAAAGAACAAGGGGGTTCTGTGTGGTATTACGCCAGTGACGCCCATGTGCAAGAGGTTTCTCTGGAAGAAGTTCTTCGTTGCGATGCTTATTTATTA TTTTATGAGAAAATATCAAATTGA
AA sequence Show only first row Show all	>Potri.001G315600.3 pacid=42793336 polypeptide=Potri.001G315600.3.p locus=Potri.001G315600 ID=Potri.001G315600.3.v4.1 annot-version=v4.1 MGKRANKKKTRPLQKEKRVAGHSPKSVPQQTNLNVEDVDGVTVVKERKLCPHFDKGFDANKLSEKISSSDSFRCEDCREAVGDRKGAKGKGKQVKKKGSG SVDSKSESKAIWVCLECGHLACGGIGLPTTSQSHAVRHSKQNRHPLVFQWENPQLRWCFPCNTLIPAEKTGENGEKKDAVFEVVNMIKAQSSKESSADVE DVWFGRGSIISELNAEGTMTIGLEGRSGHVVRGLVNLGNTCFFNSVMQNLLAMNKLHDHFSSEEASFGPLSSSLKKLFTDLKAETGFRNVINPKSFFGSV CSKAPQFRGYQQQDSHELLHCLLDGLSTEELTVRKRRNASEEDGIPPKHGPTFVDSAFGGLISSTVCCVECGHSSTVHEPFLDLSLPVPTKKPPTKKVQP VSQAKKTKLPPKRGGKVQPKINRNTDSMPAQSVSKPSVQSDSPCQTQSAVPLTENTVASSDNIPAPGSTAPTTAVDERGEVSQNLAAVIESDSKQAVETT MEQIASSFDDFWMDYIGAETTSEHDFAKENNVLAAGQQCGDKVNIPNDDLTETCQASSIDGEPNKKPESSSVNPWEEEVPLQVQSSEVLLLPYKEEGFTD REIMKGESEAGSSFVGCGQDEAEFDGIGDLFNEPEVSAAPVAGPSLGNEVALPSFIAGISSESDPDEVDDSDSPVSLESCLALFIKPELLSNDNAWECEN CSNILREQRLDAKNKQSKISPKASINGDETQIQSDSVSLDKNISCSTEVGSFEDGDAIPNNLCNSTPEVFVSGNGCSNKKFIHAEIVQTEMEPFISQSEE RKYEMNVSHSSGCYESCNRETLSGPPVDSCSVDETSSTGYTMAKDEQTDCNFPGNCESDVNEDGDKTLKKLNVKRDATKRVLIDKAPPILTVHLKRFSQD ARGRLSKLNGHVNFRDVLDLRPYMDPRCVDTQSYVYRLLGVVEHSGTMRGGHYIAYVRGDARGKGRADKEQGGSVWYYASDAHVQEVSLEEVLRCDAYLL FYEKISN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Potri.001G315600 [exp]	0	1	UBP2.2
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Potri.002G140200 [exp]	5.47	0.7687
AT4G27680			P-loop containing nucleoside t...		Potri.012G027000 [exp]	16.79	0.7640
AT5G47400			unknown protein		Potri.001G155800 [exp]	16.79	0.7400
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.015G079800 [exp]	44.11	0.7382
AT5G25060			RNA recognition motif (RRM)-co...		Potri.006G265700 [exp]	52.30	0.7227
AT5G11700			unknown protein		Potri.006G234500 [exp]	53.44	0.7277
AT4G01020			helicase domain-containing pro...		Potri.017G050100 [exp]	54.09	0.7209
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Potri.017G072460 [exp]	60.74	0.7231
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.014G086500 [exp]	64.34	0.7264
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G046300 [exp]	70.00	0.7106

Compare expression of checked genes

Potri.001G315600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.