Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13600 155 / 3e-47 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G18650 113 / 3e-31 PDCB3 plasmodesmata callose-binding protein 3 (.1) AT1G11820 110 / 3e-28 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G30933 105 / 8e-28 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT5G61130 102 / 7e-27 PDCB1 plasmodesmata callose-binding protein 1 (.1) AT2G05790 105 / 3e-26 O-Glycosyl hydrolases family 17 protein (.1) AT2G16230 103 / 1e-25 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 101 / 5e-25 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G24318 101 / 7e-25 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G34480 100 / 1e-24 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055700 [exp] 235 / 3e-79 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.012G065750 [exp] 115 / 1e-31 AT1G18650 142 / 1e-42 plasmodesmata callose-binding protein 3 (.1) Potri.015G057800 [exp] 114 / 1e-31 AT1G18650 151 / 3e-46 plasmodesmata callose-binding protein 3 (.1) Potri.011G094400 [exp] 111 / 2e-28 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G006100 [exp] 108 / 2e-27 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.005G003500 [exp] 108 / 4e-27 AT2G30933 142 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.004G010500 [exp] 107 / 5e-27 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G059600 [exp] 103 / 7e-27 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.008G055900 [exp] 104 / 3e-26 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032601 [exp] 172 / 2e-54 AT4G13600 167 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10021619 [exp] 116 / 8e-32 AT1G18650 151 / 1e-45 plasmodesmata callose-binding protein 3 (.1) Lus10034690 [exp] 109 / 5e-29 AT1G18650 157 / 8e-48 plasmodesmata callose-binding protein 3 (.1) Lus10040522 [exp] 107 / 1e-28 AT1G18650 158 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10021157 [exp] 106 / 1e-28 AT1G18650 157 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10037071 [exp] 103 / 3e-27 AT1G18650 138 / 3e-41 plasmodesmata callose-binding protein 3 (.1) Lus10036914 [exp] 103 / 4e-27 AT1G18650 139 / 2e-41 plasmodesmata callose-binding protein 3 (.1) Lus10007929 [exp] 107 / 6e-27 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 106 / 1e-26 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10007342 [exp] 103 / 1e-26 AT2G30933 167 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.001G315700.4 pacid=42790292 polypeptide=Potri.001G315700.4.p locus=Potri.001G315700 ID=Potri.001G315700.4.v4.1 annot-version=v4.1 ATGGCAAAAGTACTCTCTAACAAACTGTTCTTTGTCTTCTTTGCAATTCACATTCTTGGGAGTGCAGTCTTTTTGCCAGCGGTGGTGGTGGAAGGGACCT GGTGCGTGGCAAGGAGTGATGCAAGTACCCAAGCCTTGCAAACTGCACTTGACTATGCATGTGCTTCTGGTGCTGACTGTACTCCAATACAGTCTAGTGG GCTGTGTTTCTTGCCTAACACAATTCAGGCTCATGCTTCTTATGCATTCAATAGTTACTTTCAAAGGAAAGCCATGGCTCCTGGCTCTTGTGACTTCTCT GGCACTGCTAGTGCTTCAAAAAGCGATCCCAGTTATGGATCTTGTATGTATCCATCTTCTCTAAGGTTAATCTTTTTCGGTGAACAAACTCAATGCATGT CAGAGAATACAGTGAGTTTGTTTGGATTCTCTTGCACTGCCGGAGGGACTGGTACCACTACAAGCACTACACCAGCCGCTAACCCCAACTTTCAAACACC GCCATCCAGTGGTGGCACCACCGGACTGAACCCTGGAATGACTCCACTGCCGGACAATTCTAAAGCTTCTTTAGGGTTTATGGTCACTGTAACCTTACTG CTTCTGTGCCATTTGCTTGTTTTCTCATTCACATTTCGGCCCATGTAG
AA sequence Show only first row Show all	>Potri.001G315700.4 pacid=42790292 polypeptide=Potri.001G315700.4.p locus=Potri.001G315700 ID=Potri.001G315700.4.v4.1 annot-version=v4.1 MAKVLSNKLFFVFFAIHILGSAVFLPAVVVEGTWCVARSDASTQALQTALDYACASGADCTPIQSSGLCFLPNTIQAHASYAFNSYFQRKAMAPGSCDFS GTASASKSDPSYGSCMYPSSLRLIFFGEQTQCMSENTVSLFGFSCTAGGTGTTTSTTPAANPNFQTPPSSGGTTGLNPGMTPLPDNSKASLGFMVTVTLL LLCHLLVFSFTFRPM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13600			Carbohydrate-binding X8 domain...		Potri.001G315700 [exp]	0	1
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Potri.012G038100 [exp]	1.00	0.9902	NAC020
AT1G63310			unknown protein		Potri.011G149100 [exp]	5.65	0.9812
AT3G50160			Plant protein of unknown funct...		Potri.006G042300 [exp]	6.32	0.9750
AT1G14730			Cytochrome b561/ferric reducta...		Potri.010G102400 [exp]	7.48	0.9770
AT5G51160			Ankyrin repeat family protein ...		Potri.014G050700 [exp]	8.06	0.9726
AT1G23530			unknown protein		Potri.010G041600 [exp]	8.30	0.9786
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050200 [exp]	9.59	0.9685
AT1G54860			Glycoprotein membrane precurso...		Potri.005G034200 [exp]	10.00	0.9767
AT1G54860			Glycoprotein membrane precurso...		Potri.005G034300 [exp]	10.39	0.9758
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Potri.001G419200 [exp]	10.58	0.9758

Compare expression of checked genes

Potri.001G315700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.