Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04235 261 / 5e-71 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016054 [exp] 387 / 1e-112 AT2G04235 218 / 2e-57 unknown protein Lus10025175 [exp] 374 / 3e-108 AT2G04235 213 / 8e-56 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G315950.1 pacid=42793542 polypeptide=Potri.001G315950.1.p locus=Potri.001G315950 ID=Potri.001G315950.1.v4.1 annot-version=v4.1 ATGGCATCAAATCCGGCAACTATAGAAGATCCCAGTCAAAACTCCAACACCGACGAGGAAACTATCGCTCTCAGGAAGAAACGGTCGCGGCGCGTGAGCT TCGCTGACCGCGAGATCACTTCCGTCCATATCTTCAACCGCGACGATGAATACGAGACCCCTCCTGACCCCCCTTCCACGAAATCCCCCATATCCGACAC AGACGATGAAGTTCGTGCTTTTTTCGGTGACCTCGCCGATAGCGATGATTCTAAAGAAATATCATCTCCCACTGGTGCCGATGATGACGATAACGATTAT TCGATCAATTCCAGGAAGTCGTTTTTTCGGCCAGTCGAGTCGCCGTCTCCGGGGGGCAGCAGTATCGTTGGCTCTGCTTCTTGTAACGATGAGGACAACT TTTTTGGGCCTGTGTCAGCGAGTTTTATTAGAGCTGGAAGATTATCTGATTCTGGTGCATCGGACTGTAATCTTGATGTTACCATGGACTCGACTGCATT TTCAATGCATTACCGAAGTCTTGTGAGGTCAGTGTCGGGAGAAGAGTTTAAGACTCCCACTGAGGTTCGTGTCGCTGCGGAAGAGAAAACACCTTCGAAT ATTACCACCCCTTCTGATCCAGGGAGTTCCATGGTACTGACAAAAGATAAGAAGGTAACTTCGCAGAATGTTTCTGGTTTTGTGCAAGGTAGTGGGGGTA GAGATTCAAATGATATGAGTCTTGTGGGAGAAAACTTGAAGAGTTATGACTATGGGAAACTTTCTCCTGGTTTGGAAGCACTTTTATCAGAAGCTATGAA GGAGCCGCAAGCGGCATCTGGTTTCCTTTCTGATTCTAGTAATGTGAAATTGTTGGAGAGGAGTGAGGTTTCAATGTTTGATGAGAATGAGAGCAGTCGC ATGGATAGAAAGGATTGCGAAGATAAAGAAGTTGGCAAGTTTGACATGCTTGACATATCTACCAAGGGAGTATCTGTGGCCAGCATGGAATTGGATGAGG CAAATGTCATTTCTGTGAGCACCAATGCTGGCCAGTGCAGCACACCTGATAGAACTCAAGGTGTGGCAGTGGATGCATTCACTCATCACCAAGTACAAAG CCCTATTCAGCTGAGCAAAGTGCAAACTGCTGATCAGCTGGGTGGAGTGCAAATGCCTAATCAACTGAGCAAAATACAAACTCCCAATCAGATGAGCAAA TTACAAACTCCTAATCAGATGAGCAAATTACAAACTCCTAATCAGATGATGCCTGTGAATAAGGACCACAGTAAAGATGCAATTGCAATGGATGTGGAGT TGCCTGCTGCTAGTATCGGCATCACATCTAATATGGATACTCAAGTTCTGAAGCTCGATTCATTAAAAAAACATGAATCTGGACAACATTCAGCTGACAT TCTTAAAGATCAATATTTTGAGGATAGAAGAAATCAATACAACACTGATCATAATTCTGATCAACAACACAGTTCCATATCTTCTTTGTCTGCTAAAAGA AGGCAGGAGATATTTTTGGATGCTTCTAATTCCTGTAGACAATTATCATACGCGACTCCTTCACCGAAACAACCAGATTCCTTTTTAAGCAAGGCAAACT TAAAAAGCAGTGGGATTCAGCCTTCTCCCCTTGTGTCTAGTTTGAAAGATAGAATTGAAATATCAAAACTCAGATTATCAAAGTTCATTTCTTCTGCAAC TTCTTTCAATTCAGTGGTGGAAGAAAACAACAAAGCAGATAAAACTAGCAAACAGGTGGATTCCCCAGTTATGAACTTAGAAAAACGTTTCTCTAGCATT GACCCGAAGGACAGAGATCATGAGAGGTTAAGGTTAAGGAACATAGTTGGCTATGGTACTGTGGCTCCAAGTGATTTTGATAATTTGACTAACAGTGGAG GAACTGTAAGCCTTTCAGAAGATGGGGAATCTCTTATGCACATGTCTGCATGTATTCTTTCCAAGGAGAGGGAAGTCCGACCACATATTTTGGCCAAGAA ATCCGTGGACAGGACATCAGTTATCCCTGAATCCGCCTCCTCATCAGTGGAGATCAAAGTGGATTTCGCAAATCTTCTGAAAACAACCAATGCATCTGAT AATTTTGTTTCTCCTCCATTGAAGGTTTTGGATCAGGGGTTATCATCACCAATACAACATCTCTCTGGCGACATGAAGCAGCAACTGACATTTGATGAAC TTGTTAGCGTTGGCTCCAATCAAGACAAGAATTCAGTAGGTAATGTTTCCATCAGTGCCCATGCCACTGCAGTAACTGACAAATTGTTATCATGGTTTGC TGAAAGGAAACCACAATCTGGTTCACTTCTTGATATTAATTATTCGGAAGACAGTTCTCAAGTGAAATGGGTGGATGACAGGCAGAGTTATCTTCAGAAT AAGCATGGTGCATCTAAATCTCCAATGAACTTCCAAACTCCTTTGAGGGAGAGGGATGCCTCAAATATTCATCCAGTAAGGCCAGACAGGAATATCATAA TTGTTGCTCCTGACCTGAGACATTCTGAAGAGGAACTTCCCGGGGAAAGAAATAAATCTTCTCTGTACACTTCAGCTTCCGTCTACAGTCCTAAGAATGT AAATGGCCCGTCACTTAAGGATATTCAGAGTTCTTCTGGTCGAAAAAGAAGAATTAGAGAATCAGTTCTTGACGATGCAGAACATGCAGAAGAAATTGGG AGGATAAAAAGGAGCCCAGAAAATAGGAATCCGCATTCTGATATGGAGTCTTTTGAAAGCATCAATGATAGGGAGATGGTTATAGATGACTCGACAGTGA AACATTGGACTGATATTTCACTAAAATTCTCGGGGGACACAAAACAGTTGCTCTCTCCATCAATTGATAAGCTAAATATTAAAGTGATTGGTGTGTTGCA AGATATTTTGGTTCACCTGCAGAAGGTTAAGAAGTTTGAGATGCTTTGTTCCCAAATTCAGCCTCAGCCTCAGAAAACATCCAGTGAAGTTAAGAGTAAC AGAATAGATGAAACAAGATCGGTGCTTTCCAAGTTAGTGTTTGAAAGGGCAAGACTACAATTAATGTCTGCCAAGCGTGAGAAACTGCTGAAAAGAGCAC AGCAACTGAGCTCTGCAATTCAGGAATCCAAGATTTTGAAGTCCAACAGTATCTGGCATCCTTCTGTGCCTGGTGAAGTTGATGATAATCTTCAAAATTC ATGCGTGGATAAAAATGGCAGAAAAATAGAGGATTCTAATGAGAAAGTAATCACAATGAGGCACGAAGCTGAAGCTTTAGATAGGAATATAAAGAGTTTA ACTAAATCTTTCCATAGTTACTGCAAAATGAAAGGCGAGCAAAGCTGTGACGAGACTATTGCACTAGTTAATGATCATCTGAAGAGGAGAACCTCTTGCA GGTTCATATGCAAGGATTTGCAGTTGTGGGAAGTTGAGGATCTGAGGAGCAGGAACGGTCAACTAAATTTTGTCCTCAACTACCATGGCTTCATCAGCCA AAGGTTCACAATAAATGCTGTTCCCACCCGTAGTATATCTATTGCAAACCAATTGAATCACACAACCATCATGAAGATCTTCCCTAATATGGATGCTTGT GTAGCATTTTCATATGCTCTAAATTCTGAGACTACTAAGAAGTATGCGGGCTCCAAAATTCTGGCACAAGAAACACAAGTTACCAGTTCACTATTGCGTA ATCTACTAGATGTGACTGAGGAAGTACAGCAGGCACAAATAGAAATCAGAAATCTGGTTAAGACAAGCTTTTCTTCTCCATCTGTTGAAAAGCTTGATTT GCTGCTTTGTTTCGTTGATTTTAACACTGGTTGGAAGGTGGTAGTGACTCTTGACATGACGTGTTTGAATCGTGGAGTTTATCCATTAGCAGCCGTTCCA TATGAGTTACAAGCTTCTACTAATGGAACACACAAGTTGTTGCCCGAGTCACTCTCAGCTCAAGTAAAAGCTGCTGTTGATAATCTTAGAATCGGCTTTT CAAGGATTGTAAGGCTTTGCAAATGCATTTCCCAGGTGATGCAATCCTTGAGCACTTGA
AA sequence Show only first row Show all	>Potri.001G315950.1 pacid=42793542 polypeptide=Potri.001G315950.1.p locus=Potri.001G315950 ID=Potri.001G315950.1.v4.1 annot-version=v4.1 MASNPATIEDPSQNSNTDEETIALRKKRSRRVSFADREITSVHIFNRDDEYETPPDPPSTKSPISDTDDEVRAFFGDLADSDDSKEISSPTGADDDDNDY SINSRKSFFRPVESPSPGGSSIVGSASCNDEDNFFGPVSASFIRAGRLSDSGASDCNLDVTMDSTAFSMHYRSLVRSVSGEEFKTPTEVRVAAEEKTPSN ITTPSDPGSSMVLTKDKKVTSQNVSGFVQGSGGRDSNDMSLVGENLKSYDYGKLSPGLEALLSEAMKEPQAASGFLSDSSNVKLLERSEVSMFDENESSR MDRKDCEDKEVGKFDMLDISTKGVSVASMELDEANVISVSTNAGQCSTPDRTQGVAVDAFTHHQVQSPIQLSKVQTADQLGGVQMPNQLSKIQTPNQMSK LQTPNQMSKLQTPNQMMPVNKDHSKDAIAMDVELPAASIGITSNMDTQVLKLDSLKKHESGQHSADILKDQYFEDRRNQYNTDHNSDQQHSSISSLSAKR RQEIFLDASNSCRQLSYATPSPKQPDSFLSKANLKSSGIQPSPLVSSLKDRIEISKLRLSKFISSATSFNSVVEENNKADKTSKQVDSPVMNLEKRFSSI DPKDRDHERLRLRNIVGYGTVAPSDFDNLTNSGGTVSLSEDGESLMHMSACILSKEREVRPHILAKKSVDRTSVIPESASSSVEIKVDFANLLKTTNASD NFVSPPLKVLDQGLSSPIQHLSGDMKQQLTFDELVSVGSNQDKNSVGNVSISAHATAVTDKLLSWFAERKPQSGSLLDINYSEDSSQVKWVDDRQSYLQN KHGASKSPMNFQTPLRERDASNIHPVRPDRNIIIVAPDLRHSEEELPGERNKSSLYTSASVYSPKNVNGPSLKDIQSSSGRKRRIRESVLDDAEHAEEIG RIKRSPENRNPHSDMESFESINDREMVIDDSTVKHWTDISLKFSGDTKQLLSPSIDKLNIKVIGVLQDILVHLQKVKKFEMLCSQIQPQPQKTSSEVKSN RIDETRSVLSKLVFERARLQLMSAKREKLLKRAQQLSSAIQESKILKSNSIWHPSVPGEVDDNLQNSCVDKNGRKIEDSNEKVITMRHEAEALDRNIKSL TKSFHSYCKMKGEQSCDETIALVNDHLKRRTSCRFICKDLQLWEVEDLRSRNGQLNFVLNYHGFISQRFTINAVPTRSISIANQLNHTTIMKIFPNMDAC VAFSYALNSETTKKYAGSKILAQETQVTSSLLRNLLDVTEEVQQAQIEIRNLVKTSFSSPSVEKLDLLLCFVDFNTGWKVVVTLDMTCLNRGVYPLAAVP YELQASTNGTHKLLPESLSAQVKAAVDNLRIGFSRIVRLCKCISQVMQSLST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04235			unknown protein		Potri.001G315950 [exp]	0	1
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Potri.011G135900 [exp]	1.00	0.7494	GPT.1
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.005G257000 [exp]	5.09	0.7490	Pt-HMG1.2
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Potri.001G118900 [exp]	6.16	0.6865
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Potri.010G081300 [exp]	6.32	0.7217
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.019G018600 [exp]	11.31	0.7242
AT2G27930			PLATZ transcription factor fam...		Potri.001G212400 [exp]	22.20	0.6645
AT5G53420			CCT motif family protein (.1.2...		Potri.015G014000 [exp]	31.03	0.7068
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.010G070700 [exp]	31.60	0.6551
					Potri.007G020732 [exp]	33.57	0.7149
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.011G129800 [exp]	36.18	0.6981

Compare expression of checked genes

Potri.001G315950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.