Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01320 86 / 2e-19 SNL1 SIN3-like 1 (.1.2) AT5G15020 79 / 4e-17 SNL2 SIN3-like 2 (.1.2) AT1G59890 70 / 5e-14 SNL5 SIN3-like 5 (.1.2.3.4) AT1G10450 66 / 8e-13 SNL6 SIN3-like 6 (.1) AT1G24190 66 / 1e-12 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT1G70060 65 / 2e-12 SNL4 SIN3-like 4 (.1) AT1G24200 62 / 7e-12 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G24210 60 / 2e-11 Paired amphipathic helix (PAH2) superfamily protein (.1) AT5G15040 58 / 3e-11 Paired amphipathic helix (PAH2) superfamily protein (.1) AT5G15030 60 / 9e-11 Paired amphipathic helix (PAH2) superfamily protein (.1), Paired amphipathic helix (PAH2) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350200 [exp] 81 / 7e-18 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2) Potri.010G038700 [exp] 72 / 1e-14 AT1G70060 1396 / 0.0 SIN3-like 4 (.1) Potri.008G192200 [exp] 69 / 7e-14 AT1G24190 1330 / 0.0 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Potri.017G056201 [exp] 50 / 2e-07 AT1G24190 0 / 1 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Potri.005G008200 [exp] 45 / 1e-06 AT5G15020 66 / 4e-14 SIN3-like 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032181 [exp] 90 / 5e-21 AT5G15020 1362 / 0.0 SIN3-like 2 (.1.2) Lus10014504 [exp] 90 / 6e-21 AT3G01320 897 / 0.0 SIN3-like 1 (.1.2) Lus10013293 [exp] 74 / 3e-15 AT1G70060 1454 / 0.0 SIN3-like 4 (.1) Lus10010729 [exp] 72 / 1e-14 AT1G70060 1191 / 0.0 SIN3-like 4 (.1) Lus10030817 [exp] 71 / 3e-14 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10030816 [exp] 54 / 4e-09 AT1G59890 140 / 8e-39 SIN3-like 5 (.1.2.3.4) Lus10029218 [exp] 54 / 1e-08 AT1G24190 270 / 4e-81 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10022887 [exp] 52 / 4e-08 AT1G24190 52 / 5e-07 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10034645 [exp] 42 / 4e-05 AT1G24190 107 / 1e-27 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10020323 [exp] 43 / 9e-05 AT3G01320 56 / 5e-08 SIN3-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02671 [poplar] [flax] PAH Paired amphipathic helix repeat
Representative CDS sequence Show only first row Show all	>Potri.001G316300.2 pacid=42788275 polypeptide=Potri.001G316300.2.p locus=Potri.001G316300 ID=Potri.001G316300.2.v4.1 annot-version=v4.1 ATGAAGCAAAACGGAGATTTGAGTCCTGGTGATTGTTCTGACCCATCCAAAACCTACATCAGAGCACTAAAAGCTAGGTTTCATGATCAGCCTGAGAAAT TCCATAGCTTTTACAAGGTCATGATTGACATCATGACTCAAAGAGTCCAGCCTGACGGCCCCGGAGGCATACCTGACGACGCCCCAGCAAGACTGAAGGC AATTCTTGAAGGTCACAACGACCTCATTTATGGGCTCAACTTTTTCTTGCCTCCTTCTCACCGAGTCAGCCTTGATGATGGGATGGAGATTGAGCCGGTC ACGGCGGAGGGAGCAGTATTATCTGGACTTGAAGATGCTAAGGATTTAATAAAGGAAGCGAAGATGCGAGGCGAGAAGGTCTATGAAGCTTTCAAGGAGA CTCTGCTGTCGACAAGCCAGAAGAGAAGCTTCGATGATGTCTGCAGTGATGTTGTTGAGCTGTTCATTGACGATCCTGATTTGCTAGAGAGGTTTCGACA ATTCATGCCTGTTTATGAACCAACTCCGCTGGCATCTTATGCTCCAAATTCCCAGATTCCTATGAATATTAATTAA
AA sequence Show only first row Show all	>Potri.001G316300.2 pacid=42788275 polypeptide=Potri.001G316300.2.p locus=Potri.001G316300 ID=Potri.001G316300.2.v4.1 annot-version=v4.1 MKQNGDLSPGDCSDPSKTYIRALKARFHDQPEKFHSFYKVMIDIMTQRVQPDGPGGIPDDAPARLKAILEGHNDLIYGLNFFLPPSHRVSLDDGMEIEPV TAEGAVLSGLEDAKDLIKEAKMRGEKVYEAFKETLLSTSQKRSFDDVCSDVVELFIDDPDLLERFRQFMPVYEPTPLASYAPNSQIPMNIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Potri.001G316300 [exp]	0	1
AT1G14370		Kin1, PBL2, APK...	PBS1-like 2, kinase 1, protein...		Potri.009G020700 [exp]	2.00	0.8959
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079800 [exp]	3.60	0.9164	ERF6
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Potri.009G057900 [exp]	3.87	0.8930
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Potri.008G219200 [exp]	4.58	0.8963	ATL2.3
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.007G094100 [exp]	5.65	0.9020
AT4G29050			Concanavalin A-like lectin pro...		Potri.003G196600 [exp]	6.48	0.8826
AT5G02220			unknown protein		Potri.010G201900 [exp]	7.74	0.8734
AT3G16510			Calcium-dependent lipid-bindin...		Potri.003G160400 [exp]	8.48	0.8767
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Potri.005G026700 [exp]	10.39	0.8555
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Potri.005G160800 [exp]	10.81	0.8750

Compare expression of checked genes

Potri.001G316300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.