Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04840 728 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 453 / 3e-150 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 451 / 5e-150 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 448 / 4e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 449 / 7e-148 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 444 / 1e-147 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 438 / 2e-145 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 439 / 8e-145 MEF22 mitochondrial editing factor 22 (.1) AT2G29760 439 / 3e-144 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 440 / 6e-143 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105700 [exp] 511 / 5e-173 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 510 / 2e-172 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G035900 [exp] 484 / 4e-163 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 474 / 3e-159 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 471 / 2e-157 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 463 / 2e-153 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 461 / 4e-153 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G220300 [exp] 456 / 5e-151 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 454 / 8e-151 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020743 [exp] 885 / 0 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029793 [exp] 867 / 0 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 486 / 8e-163 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 469 / 4e-157 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 463 / 9e-154 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 461 / 2e-153 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 448 / 1e-148 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 444 / 3e-146 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 440 / 8e-146 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 443 / 5e-144 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.001G316500.1 pacid=42789735 polypeptide=Potri.001G316500.1.p locus=Potri.001G316500 ID=Potri.001G316500.1.v4.1 annot-version=v4.1 ATGAAATCACTCCATGCCTTGTTTAAACCACCCTCCTCTCCCACCAAAACCACAACCTCCTCCTCCTCTACCGCCACCACCGCATCAAAGACTAGAAAAC CCGCAACCTCCTCCTCCTCCTCAAATGCACCAATTCCCTCTCCAAATCCACCAGAAATCACCACAACCATCTCCAAGACATCAGAAAACAAACCAAAGAG CTCACTTTCTGCTCTTTTTATTCCACCGACTACACCCACAGAAGCCCATTTCATCTCTCTAATTCACGGTTCCAAAACAATTCTCCAACTCCACCAAATC CACGCCCAAATCATCATCCACAACCTCTCTTCAAGCAGCCTAATTACCACCCAACTAATCTCTTCCTCTTCTTTGCGCAAATCCATCAACCACTCGCTAG CAGTTTTCAACCACCATAAACCCAAGAATTTGTTTACATTCAATGCATTAATTCGTGGGCTCACCACAAATTCTCATTTTTTCAATGCCATTTTTCATTT TAGGCTAATGTTAAGGTCTGGCATTAAGCCTGACCGGCTTACATATCCGTTTGTGCTTAAATCTATGGCGGGTTTGTTCTCAACAGAGCTTGGTATGGCT ATTCATTGTATGATTTTGAGGTGTGGGATTGAACTCGATTCATTTGTAAGAGTTTCTTTGGTTGATATGTATGTAAAAGTTGAGAAGTTGGGGTCGGCTT TCAAGGTGTTTGATGAAAGCCCTGAGAGATTTGATAGCGGGAGCAGTGCGTTGTTGTGGAATGTGTTGATTAAGGGCTGTTGTAAGGCTGGGAGTATGAA GAAGGCTGTGAAGCTTTTTAAGGCCATGCCAAAGAAGGAGAATGTGTCTTGGAGTACTTTGATTGACGGATTTGCAAAAAATGGGGATATGGATCGTGCT ATGGAGCTTTTTGATCAAATGCCAGAGAAGAATGTGGTTTCTTGGACCACAATGGTTGATGGGTTTTCGCGGAATGGAGATAGTGAGAAGGCGCTGTCAA TGTTTTCTAAAATGTTGGAGGAAGGGGTGAGGCCGAATGCTTTCACCATTGTTTCTGCTCTTTCTGCTTGTGCAAAGATTGGTGGCCTTGAAGCTGGGTT ACGGATACATAAATATATCAAGGATAATGGTCTCCATTTGACTGAAGCACTCGGGACTGCCTTGGTCGATATGTATGCCAAATGTGGGAATATTGAGTCT GCAAGTGAGGTGTTTGGAGAGACAGAACAGAAGAGTATTCGTACATGGACTGTTATGATATGGGGTTGGGCAATCCATGGACATTCTGAGCAAGCGATTG CATGCTTTAAACAGATGATGTTTGCAGGTATAAAACCAGACGAGGTTGTATTTCTTGCCTTATTAACTGCTTGCATGCATTCTGGCCAAGTAGATATTGG ACTTAACTTCTTCGATAGCATGAGGCTTGATTACTGCATTGAACCCTCTATGAAACACTATACATTGATTGTTGATATGCTAGGTAGGTCTGGTCAGCTT AAAGAAGCCCTCAGATTCATTGAACGCATGCCAATGAATCCTGATTTTGTGATATGGGGAGCACTCTTTTGTGCTTGTAGGGCTCACAAAAAAACCAAAA TGGCAAAATTTGCTTTAAATAAACTCCTGAAGCTTGAACCTACACATACTGGGAACTACATCTTCTTGTCAAATGCTTATGCTGCTCTAGGCCAATGGGA AGATGCGGAGAGAGTAAGAGTTCTGATGCAGAATAGAGGTGTTCACAAAAATAGTGGATGGAGTTGCATTGAGGTGGAGGGTCAAGTGCATCGCTTTGTA TCTGGTGATCATGATCACAAGGATTCAAAAGCGATATGCCTGAAATTAGAAGAAATAATGGCAGGTGCAGTGAAACAAGGATACATACCTGGAACTGAGT GGGTACTTCATAATATGGAACAAGAAGAAAAAGAAGATGTGTTGGGAAGTCATGGTGAGAAGTTAGCACTTGCTTTTGCGCTCATTTGTACTTCTCCTGG GATGACTATTAGGATTGTGAAAAATCTTCAAGTATGTGGGGATTGCCATTCTTTGATGAAATATGCTAGTAAGATAAGTCAAAGGGAGATCATGTTGAGA GATATGAAGCGATTCCATCATTTCAAGGATGGATCTTGTTCATGTAGAGATCACTGGTAA
AA sequence Show only first row Show all	>Potri.001G316500.1 pacid=42789735 polypeptide=Potri.001G316500.1.p locus=Potri.001G316500 ID=Potri.001G316500.1.v4.1 annot-version=v4.1 MKSLHALFKPPSSPTKTTTSSSSTATTASKTRKPATSSSSSNAPIPSPNPPEITTTISKTSENKPKSSLSALFIPPTTPTEAHFISLIHGSKTILQLHQI HAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMA IHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRA MELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIES ASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQL KEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFV SGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCHSLMKYASKISQREIMLR DMKRFHHFKDGSCSCRDHW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04840			Tetratricopeptide repeat (TPR)...		Potri.001G316500 [exp]	0	1
AT3G24000			Tetratricopeptide repeat (TPR)...		Potri.006G001200 [exp]	1.41	0.9517
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Potri.019G130300 [exp]	2.23	0.9273
AT2G33730			P-loop containing nucleoside t...		Potri.012G045800 [exp]	3.60	0.9151
					Potri.003G088350 [exp]	4.24	0.9248
					Potri.001G088050 [exp]	4.35	0.9080
					Potri.011G062401 [exp]	4.47	0.9284
AT2G27940			RING/U-box superfamily protein...		Potri.001G212101 [exp]	5.47	0.9138
AT2G34930			disease resistance family prot...		Potri.015G024500 [exp]	5.83	0.9098
					Potri.011G073666 [exp]	6.48	0.9245
AT5G28460			Pentatricopeptide repeat (PPR)...		Potri.014G090400 [exp]	9.79	0.9189

Compare expression of checked genes

Potri.001G316500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.