Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13730 586 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT1G04830 550 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 103 / 1e-23 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G28550 102 / 1e-23 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 99 / 3e-22 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G27100 86 / 7e-18 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 77 / 4e-15 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G41940 77 / 1e-14 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G52580 76 / 2e-14 RabGAP/TBC domain-containing protein (.1.2) AT3G49350 72 / 3e-13 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057100 [exp] 685 / 0 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.018G131300 [exp] 434 / 4e-149 AT4G13730 414 / 4e-142 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.006G069300 [exp] 419 / 1e-143 AT4G13730 385 / 1e-130 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.007G134200 [exp] 108 / 2e-25 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.005G227400 [exp] 103 / 7e-24 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G419100 [exp] 86 / 6e-18 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.011G135300 [exp] 82 / 1e-16 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.018G127500 [exp] 82 / 3e-16 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.006G066300 [exp] 80 / 1e-15 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017104 [exp] 598 / 0 AT1G04830 580 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10037829 [exp] 554 / 0 AT1G04830 537 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10022905 [exp] 105 / 3e-24 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10024920 [exp] 101 / 6e-23 AT4G28550 618 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008148 [exp] 100 / 2e-22 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10019370 [exp] 92 / 2e-20 AT2G30710 568 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027046 [exp] 90 / 8e-19 AT2G30710 526 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10011159 [exp] 84 / 5e-17 AT4G27100 634 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10043064 [exp] 83 / 9e-17 AT2G20440 630 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10027697 [exp] 76 / 9e-15 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.001G316700.3 pacid=42789768 polypeptide=Potri.001G316700.3.p locus=Potri.001G316700 ID=Potri.001G316700.3.v4.1 annot-version=v4.1 ATGGTGAAGAAAAAAGTACCAGATTGGCTCAACAGCTCTCTCTGGTCCACCACTCCTTCCGCCTCCTCCTCGTCCACCGCCACCACCGACACCAATATCT TCGACCACCACTCACCCACCACCGCCTCTCCACCCCTCGAATCCCCAATCAATCCACCGCTACCTCCTGCGGCTATCAGAGACGAGCAACAACAGCAGCC GCCGCGTCATCATCATCCTCAAAAACCTGAGATTAAAGATAAGCTTTCCAAAAGCAGCATCGTTGACGACGACGACAACAACAATAGTATTATTAATGAT AATTATAGTGATGATAATATTATTAATAATAAAATAATTATTACTAATAATGATATTCGAAATGTTGATGATGATGAGAGCGCTGCAGAGGATATTTCTA AGCAGGCTCTGCTTCTGACTGAGCTATCAAAGAAGGTGATAAATATGGGGGAATTGAGAAGAATTGCTTCTCAAGGGATACCTGATGGTGCTGGTATTCG TTCCACGGTTTGGAAGCTCTTGTTGGGGTATTTGGCACCTGATCGTTCACTTTGGTCGTCTGAATTGGCCAAGAAGAGATCTCAGTACAAGCATTTTAAA GAGGATCTTTTGATGAATCCTTCAGAAATAGCAAGGAGGTTGGAGAAAACCACTGTTCTCAACAATGACAATGGAAAATCTGAAAGCCGTTGTGTACTCT CAAGATCAGAGATAACTCATGGGGAGCATCCTTTGAGCCTTGGTAAGAGCAGCGTTTGGAATCAATTCTTTCAGGACTCAGAGATCATAGAGCAGATTGA TCGAGATGTGAAACGCACTCATCCAGACCTGCACTTCTTTTCTGGGGACTCATCTCTTGCAAAATCTAATCAGGAGGCTTTGAGAAACATACTGACTGTA TTTGCAAAGTTAAATCCGGGTATACGATATGTTCAAGGGATGAATGAAATTTTGGCACCACTATTCTACATATTCAAAAATGACCCTGATGAGGAAATGG CGGCCTTTGCAGAAGCAGACACATTTTTCTGCTTTGTTGAGCTGTTGAGTGGATTTCGGGATCATTTCTGTCAGCAACTTGACAACAGTGTTGTGGGAAT TCGATCAACTATTACAAGATTGTCACAGCTTCTGAAGGAGCATGATGAAGAGCTTTGGCGTCATCTTGAGATCACAACCAAAGTAAACCCCCAGTTTTAC GCATTTCGGTGGATTACTCTGCTCCTGACTCAGGAGTTCAATTTCGCAGATAGTCTTCACATTTGGGACACACTTTTAAGTGACCCCGAGGGTCCTCAGG AGACATTGCTTAGGGTATGTTGTGCAATGCTGATTCTCATTAGGAGGCGTCTACTAGCAGGGGATTTCACTTCTATTCTCAAGCTACTCCAGAATTATCC CCCAACAAACATTAGTCATATGCTCTATGTCGCAAACAAATTGCGTGGTCAACCATCACGCTAA
AA sequence Show only first row Show all	>Potri.001G316700.3 pacid=42789768 polypeptide=Potri.001G316700.3.p locus=Potri.001G316700 ID=Potri.001G316700.3.v4.1 annot-version=v4.1 MVKKKVPDWLNSSLWSTTPSASSSSTATTDTNIFDHHSPTTASPPLESPINPPLPPAAIRDEQQQQPPRHHHPQKPEIKDKLSKSSIVDDDDNNNSIIND NYSDDNIINNKIIITNNDIRNVDDDESAAEDISKQALLLTELSKKVINMGELRRIASQGIPDGAGIRSTVWKLLLGYLAPDRSLWSSELAKKRSQYKHFK EDLLMNPSEIARRLEKTTVLNNDNGKSESRCVLSRSEITHGEHPLSLGKSSVWNQFFQDSEIIEQIDRDVKRTHPDLHFFSGDSSLAKSNQEALRNILTV FAKLNPGIRYVQGMNEILAPLFYIFKNDPDEEMAAFAEADTFFCFVELLSGFRDHFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEITTKVNPQFY AFRWITLLLTQEFNFADSLHIWDTLLSDPEGPQETLLRVCCAMLILIRRRLLAGDFTSILKLLQNYPPTNISHMLYVANKLRGQPSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.001G316700 [exp]	0	1
AT5G48655			RING/U-box superfamily protein...		Potri.002G245500 [exp]	2.00	0.7753
AT1G68490			unknown protein		Potri.010G124400 [exp]	3.16	0.7946
AT1G80450			VQ motif-containing protein (....		Potri.006G266700 [exp]	6.32	0.7325
AT1G59600		ZCW7	ZCW7 (.1)		Potri.002G118300 [exp]	6.48	0.7690
AT5G58190		ECT10	evolutionarily conserved C-ter...		Potri.006G079900 [exp]	10.39	0.7407
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.002G164400 [exp]	12.84	0.7277
AT5G09390			CD2-binding protein-related (....		Potri.003G023700 [exp]	13.07	0.7726
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.003G182100 [exp]	16.12	0.7714
AT1G08710			F-box family protein (.1.2)		Potri.013G067600 [exp]	21.81	0.7589
AT3G27100			unknown protein		Potri.001G330400 [exp]	22.09	0.7718

Compare expression of checked genes

Potri.001G316700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.