Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04910 847 / 0 O-fucosyltransferase family protein (.1) AT1G22460 287 / 2e-90 O-fucosyltransferase family protein (.1) AT4G24530 280 / 5e-88 O-fucosyltransferase family protein (.1) AT2G37980 279 / 3e-86 O-fucosyltransferase family protein (.1) AT3G54100 275 / 7e-85 O-fucosyltransferase family protein (.1) AT5G35570 275 / 9e-85 O-fucosyltransferase family protein (.1) AT1G14020 271 / 1e-84 O-fucosyltransferase family protein (.1) AT5G65470 270 / 2e-84 O-fucosyltransferase family protein (.1) AT5G64600 270 / 5e-84 O-fucosyltransferase family protein (.1) AT4G38390 266 / 2e-82 RHS17 root hair specific 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057300 [exp] 907 / 0 AT1G04910 828 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 291 / 4e-92 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 286 / 4e-90 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 284 / 1e-89 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 282 / 5e-89 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 283 / 1e-88 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 280 / 7e-88 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 277 / 1e-86 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 275 / 3e-86 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037830 [exp] 856 / 0 AT1G04910 851 / 0.0 O-fucosyltransferase family protein (.1) Lus10032603 [exp] 839 / 0 AT1G04910 845 / 0.0 O-fucosyltransferase family protein (.1) Lus10017105 [exp] 786 / 0 AT1G04910 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10030093 [exp] 374 / 2e-126 AT1G04910 384 / 2e-130 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 287 / 1e-90 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 281 / 1e-88 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 276 / 1e-86 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 274 / 9e-86 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10002653 [exp] 273 / 3e-85 AT5G65470 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10012732 [exp] 272 / 4e-85 AT5G65470 765 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G316800.1 pacid=42790347 polypeptide=Potri.001G316800.1.p locus=Potri.001G316800 ID=Potri.001G316800.1.v4.1 annot-version=v4.1 ATGAGAAGAAGATTAGGACACCACAGGCAACACGGAAAGCAAGGAGGAGTAGGAGGAAGAGGATTATTATTGAAACTATTGATAGCAGTTTTTGTTGTTC TCTTGATCTGCACTCTTTCTTTACTCTTTTCCGCTACTATTACTGCAACTAACGGATCCAACGCTCCATCTGAGATAAATGTAGAAAAACTATGGGAAAG TGCGAATTCGGGTGGTTGGAGGCCATCATCTTCTCCACGAACTGATTGGCCATCTCCTCCAAAAGAGACCAGGGGGTATCTTCGTGTTCGCTGTAATGGT GGTTTGAATCAGCAAAGAAGTGCGATCTGTAATGCTGTTCTTGCTGCAAGAATCATGAACGCTACACTTGTTTTGCCTGAGTTGGATGCGAACTCCTTCT GGCATGATGACAGTGGATTCCATGGCATCTATGACGTTGAACATTTTATCCAGTCACTGAGATTTGATGTACGAATTGTGGAAAGAATACCAGAAATTCG TAAAAATGGGAAAACTAAAAAGATAAAGGCTTTTCAGCTGCGCCCCCCAAGAGATGCTCCTATTAGTTGGTATACAACTGAAGCTCTGGAGAAAATGAAG GAACATGGAGCCATCTATCTAACTCCATTTTCACATCGTTTAGCTGAAGAAATTGACAACCCTGAGTACCAGCGGTTGAGGTGCAGAGTTAACTATCATG CTCTAAGATTTAAACCACACATTATGAAGTTAAGCGAGTCAATAGTTGATAAACTACGTTCTCAAGGTCACTTCATGGCAATACACCTTCGTTTTGAGAT GGACATGCTGGCATTTGCCGGGTGCTTTGATATATTTAGCCCTGCAGAGCAAAAAATATTGAAGAAGTATCGGATGGAAAATTTTGCCAAGAAAACACTC ATTTATAAAGAAAGAAGGGCGATTGGAAAATGTCCACTTGCTCCAGAAGAGGTTGGTCTTCTTTTACGTGCAATGGGGTTCAACAATTCCACCAGGATGT ACCTAGCAGCTGGTGAACTGTTTGGTGGAGAGCACTTTATGAAACCATTTAGGGCCCTTTTCCCTCACCTTGAAAATCACAGTTCTGTGGATTCTAGTGA GGAGCTAGCCGCAAATGCTCGGGGATTGATAGGCTCTGCTGTGGATTACATGGTTTGTCTTCTTGCTGACATATTTATGCCAACTTATGATGGGCCAAGC AACTTTGCCAACAATCTCTTGGGTCACCGCCTGTATTATGGCTTTCGAACAAATATAAGACCTGACAGGAAAGGTCTTGCCCCAGTTTTTACTGCTCGAG AAGAGGGACAGACAGCTGGTTTTGAAGAAGCAGTTAGACGTGTCATGCTCAAAACAAACTTTGGTGGCCCTCACAAACGGATCTCACCTGAATCATTTTA TACGAATTCTTGGCCTGAATGTTTCTGTCAAATGGAAACACGGAATCCTGATGATAAATGCCCATCAGAGAATGTCATGCAAATTTTGCATAGCCAGTTA GAGAGTGAAAACATGGACTCGGAAATATACAACCAATCAGATTCAGTAGTTTCTTTGGCAGAAAGATAA
AA sequence Show only first row Show all	>Potri.001G316800.1 pacid=42790347 polypeptide=Potri.001G316800.1.p locus=Potri.001G316800 ID=Potri.001G316800.1.v4.1 annot-version=v4.1 MRRRLGHHRQHGKQGGVGGRGLLLKLLIAVFVVLLICTLSLLFSATITATNGSNAPSEINVEKLWESANSGGWRPSSSPRTDWPSPPKETRGYLRVRCNG GLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFHGIYDVEHFIQSLRFDVRIVERIPEIRKNGKTKKIKAFQLRPPRDAPISWYTTEALEKMK EHGAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSESIVDKLRSQGHFMAIHLRFEMDMLAFAGCFDIFSPAEQKILKKYRMENFAKKTL IYKERRAIGKCPLAPEEVGLLLRAMGFNNSTRMYLAAGELFGGEHFMKPFRALFPHLENHSSVDSSEELAANARGLIGSAVDYMVCLLADIFMPTYDGPS NFANNLLGHRLYYGFRTNIRPDRKGLAPVFTAREEGQTAGFEEAVRRVMLKTNFGGPHKRISPESFYTNSWPECFCQMETRNPDDKCPSENVMQILHSQL ESENMDSEIYNQSDSVVSLAER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04910			O-fucosyltransferase family pr...		Potri.001G316800 [exp]	0	1
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.001G152000 [exp]	3.46	0.9312
AT3G22290			Endoplasmic reticulum vesicle ...		Potri.006G023900 [exp]	5.09	0.9222
AT3G07950			rhomboid protein-related (.1)		Potri.010G220900 [exp]	13.85	0.9162
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.004G074500 [exp]	14.49	0.9132
AT5G64180			unknown protein		Potri.015G005600 [exp]	15.65	0.9133
AT1G50120			unknown protein		Potri.007G071000 [exp]	15.74	0.9153
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Potri.001G211400 [exp]	18.33	0.8664
					Potri.001G466500 [exp]	22.64	0.9032
AT4G00560			NAD(P)-binding Rossmann-fold s...		Potri.014G079700 [exp]	23.66	0.9026
AT1G14020			O-fucosyltransferase family pr...		Potri.008G090600 [exp]	25.65	0.9113

Compare expression of checked genes

Potri.001G316800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.