Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04980 321 / 3e-98 unknown protein AT1G11070 280 / 1e-83 unknown protein AT1G61080 253 / 8e-73 Hydroxyproline-rich glycoprotein family protein (.1) AT3G25690 64 / 3e-10 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT4G18570 61 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G038400 [exp] 358 / 8e-113 AT4G04980 387 / 4e-121 unknown protein Potri.011G047100 [exp] 354 / 1e-110 AT4G04980 358 / 1e-109 unknown protein Potri.010G130800 [exp] 62 / 1e-09 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G460300 [exp] 60 / 6e-09 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G156500 [exp] 57 / 3e-08 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.004G054900 [exp] 53 / 5e-07 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G064500 [exp] 46 / 7e-05 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038307 [exp] 321 / 6e-98 AT1G11070 330 / 2e-99 unknown protein Lus10018473 [exp] 316 / 2e-95 AT4G04980 347 / 1e-104 unknown protein Lus10011209 [exp] 315 / 3e-95 AT4G04980 336 / 2e-100 unknown protein Lus10033704 [exp] 296 / 4e-90 AT4G04980 311 / 4e-94 unknown protein Lus10031636 [exp] 292 / 4e-89 AT4G04980 313 / 3e-95 unknown protein Lus10036174 [exp] 219 / 2e-67 AT4G04980 236 / 6e-73 unknown protein Lus10034382 [exp] 67 / 5e-11 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034264 [exp] 66 / 7e-11 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10000986 [exp] 63 / 5e-10 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015292 [exp] 56 / 7e-08 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G317001.1 pacid=42790724 polypeptide=Potri.001G317001.1.p locus=Potri.001G317001 ID=Potri.001G317001.1.v4.1 annot-version=v4.1 ATGGAGGATCTTCACAAGCTGTACCCAGAAGCCTTGCCGAACATACCTATTTCAGTAATCAAAGGGACACCTGTAGACAAGAGAGTAGCACATTTCTGCA AGGCGTTGACATATATTAGAGATTCATGGATGGTCAGATTCAGATATGATAAGACTGGTAGAATCAAGAACACCGATGGGGCACAACTTGTTGATGCAGC GTTCGCAACGTTTGATTACATGATTAAGGTAGCAAGAGAACTATTTGACATCCTGGAAGATGAAGAGCTGGAGAACGATTATGGCTCATTGGCTAGCACG TTAAAACAGTCCTCTTCTTATCCCAGCAAGCTTGTTTCTCCTGCTGCTGCAACTGATGTTTGTGCAAAAACTAGAGAGTCTGCAAATATTTCGGAGCCTC CATCACGTCCCCAGTCTCTTGGAGACCAGGGTATTAAAAAATATAGCCACTTGATGCAAAAGAACGAAAGTATTGAGGCACAGAAGCCAAATAGCAAAGT TCCCACAAGCAAAAACACAAAGGGTGTAGCTTCTATTATGGATGAGAATTCTATCAAGACACCAGATGATAAACCTGGTCGAACAGGAATTCCAATGGCT CCTCCACCGCCAGCCAATATCTCCAAAGAAAGGGCGCAATCGACACCACCACCAGTAATGCCTTCAAAAGGATCAGTACCAGATGCAATGCCACTCAAAA AGGGTCCTCCTCCTCCACCTCCACCACCACCAGCAATGTCTTTGAAAGGATCGGCACCAAATGGCATGCCGCCCAAAAATGTTCCTGCCCCATCTCCATT ACCAACTATGCCTTCGAAAGGATCAGCACCAAATTCCTTGCCACTAGAAAAGGGCCCTCCACCTCCTCCACCGCCTTTAGTGCCTTCGAAAGGGTCAATA CCAAATGCAATGCCACTCAGAAAGGGTCCTCCTCCTCCACCTCCTCCACCTCCTCCACCAGTAATGCCTTCAAAAGGATCAACACCAAATGGCATGCCGC TCGACACTGTCCCTGCCCCACCTCCACCACCAATGATGTCTTCGAAAGGATCGGCATCAAACACCATGCTGCTCAAAAAGGGGCCTCCGCCGCCTCTACC GCCCCAATTTGGTGCTGGTAAGTCCCTGTTTCAGACAAGACCCACTACCAAACTAAAGAGATCCACCCAGATGCCGAACCTGTTTCGTGATCTCAGGAGC AAGATGGAAGGATCTAGTCTAACTGTTAAGACAACTAATGTAAGAAAGGTGCAGCTTGGAGGTTCTAAGGGTGGCAAGGAAGGATTGGCTGCTTCACTAC CAGAAATGACAAAAAGATCAACGTACTTCCAGCAAGTTGAAGAAGATATTAAGATATATTCAAAATCCATCATAGAGTTGAAGGCAGACATCAATTCTTT TCAGACAAAGGACATGATAAAGCTGCTCAAGTTTCAAAGCAATGTAGAATCCATTCTTCAATTCCTAACTGATGAATCACAGGTGCTTGCCAAGTTTGAA GGTTTTCCCTCAAAGAAGTTGGAAACATTACGAACAGCAGCTGCACTGTACTCAAAATTCGACACGATAGTCACTACCTTGAAGAACTGGGAGGTTGTAC CTCCCTTGGGACAGCTTTTGGACAAGATTGAGAAATATTTGAGTAAGATCAAATTAGAGCTGGATGCATTTGAACGAAGCAAGGACGAAGAATCCAAAAA ATTTAAGAGCCATAACATTGATTTTGAATTCCACATAGTCACCAAGATTAGAGAATCAATGGTGAATCTTTCTTCCAACTGCATGGAGCTAGCACTCAAG GAGAGGAGAGAATCAAAAACAGCAGTTGAAAATCAACAAACTATGGCTAAACCTGATCAGAAAACTAAAGAAAGCGTTAAAATGCTTTGGAGAGTTTTTC AGTTAGCATTTCGAGTCTACAGTTTCGCTGGCGGACAAGATGATCGTGCTGAAACATTGGCCAAAGAATTGGCAGATGAAATCTTAATTGATTCACCAAA CCAATAA
AA sequence Show only first row Show all	>Potri.001G317001.1 pacid=42790724 polypeptide=Potri.001G317001.1.p locus=Potri.001G317001 ID=Potri.001G317001.1.v4.1 annot-version=v4.1 MEDLHKLYPEALPNIPISVIKGTPVDKRVAHFCKALTYIRDSWMVRFRYDKTGRIKNTDGAQLVDAAFATFDYMIKVARELFDILEDEELENDYGSLAST LKQSSSYPSKLVSPAAATDVCAKTRESANISEPPSRPQSLGDQGIKKYSHLMQKNESIEAQKPNSKVPTSKNTKGVASIMDENSIKTPDDKPGRTGIPMA PPPPANISKERAQSTPPPVMPSKGSVPDAMPLKKGPPPPPPPPPAMSLKGSAPNGMPPKNVPAPSPLPTMPSKGSAPNSLPLEKGPPPPPPPLVPSKGSI PNAMPLRKGPPPPPPPPPPPVMPSKGSTPNGMPLDTVPAPPPPPMMSSKGSASNTMLLKKGPPPPLPPQFGAGKSLFQTRPTTKLKRSTQMPNLFRDLRS KMEGSSLTVKTTNVRKVQLGGSKGGKEGLAASLPEMTKRSTYFQQVEEDIKIYSKSIIELKADINSFQTKDMIKLLKFQSNVESILQFLTDESQVLAKFE GFPSKKLETLRTAAALYSKFDTIVTTLKNWEVVPPLGQLLDKIEKYLSKIKLELDAFERSKDEESKKFKSHNIDFEFHIVTKIRESMVNLSSNCMELALK ERRESKTAVENQQTMAKPDQKTKESVKMLWRVFQLAFRVYSFAGGQDDRAETLAKELADEILIDSPNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04980			unknown protein		Potri.001G317001 [exp]	0	1
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Potri.004G000400 [exp]	11.26	0.9848
					Potri.001G268400 [exp]	14.10	0.9574
AT2G39210			Major facilitator superfamily ...		Potri.006G122400 [exp]	16.18	0.9848
AT5G46940			Plant invertase/pectin methyle...		Potri.003G086500 [exp]	19.59	0.9843
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037033 [exp]	22.97	0.9842
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.006G188400 [exp]	25.00	0.9842
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037000 [exp]	28.46	0.9842
					Potri.006G261022 [exp]	30.28	0.9841
AT2G13810		EDTS5, ALD1	eds two suppressor 5, AGD2-lik...		Potri.002G091500 [exp]	36.74	0.9840
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.003G213700 [exp]	38.82	0.9840

Compare expression of checked genes

Potri.001G317001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.