Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22330 399 / 4e-142 ATCES1 Alkaline phytoceramidase (aPHC) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057500 [exp] 464 / 7e-168 AT4G22330 418 / 1e-149 Alkaline phytoceramidase (aPHC) (.1) Potri.004G001300 [exp] 404 / 3e-144 AT4G22330 437 / 3e-157 Alkaline phytoceramidase (aPHC) (.1) Potri.011G023401 [exp] 403 / 7e-144 AT4G22330 454 / 6e-164 Alkaline phytoceramidase (aPHC) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032606 [exp] 411 / 4e-147 AT4G22330 423 / 9e-152 Alkaline phytoceramidase (aPHC) (.1) Lus10043146 [exp] 411 / 7e-147 AT4G22330 422 / 1e-151 Alkaline phytoceramidase (aPHC) (.1) Lus10032605 [exp] 408 / 7e-146 AT4G22330 420 / 1e-150 Alkaline phytoceramidase (aPHC) (.1) Lus10043147 [exp] 402 / 2e-143 AT4G22330 415 / 9e-149 Alkaline phytoceramidase (aPHC) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [poplar] [flax] GPCR_A PF05875 [poplar] [flax] Ceramidase Ceramidase
Representative CDS sequence Show only first row Show all	>Potri.001G317400.3 pacid=42788030 polypeptide=Potri.001G317400.3.p locus=Potri.001G317400 ID=Potri.001G317400.3.v4.1 annot-version=v4.1 ATGGCTGAAGCAATATCGAGCTTTTGGGGACCTGTAACATCTGCAGAGTGGTGTGAAAAAAATTATGTCTATTCATCTTATATTGCTGAATTTTTCAACA CCGTTTCAATTATCCCAGGCATTCTCTTGGCACTCATCGGCCTTATAAATGCTTTAAGACAACGGTTTGAGAAGAGGTTTAGCGTACTTCACATATCTAA TATGATACTTGCCATTGGAAGTATGTTATACCATGCCACTCTGCAACGCATGCAGCAGCAAGGTGATGAAACACCCATGGTTTGGGAAATGCTTTTGTAT TTCTACATCCTCTACTCACCAGATTGGCACTACCGAAGTGTGATGCCCACCTTCTTGTTCCTTTATGGAGCTGCATTTGCAATTTTCCATGCACTGGTCC GTTTTGAAATTGGTTTCAAGGTACATTATGTGATTCTTTGCCTTCTCTGTGTTCCCCGGATGTACAAATACTACATCTACACAAAAGATGCATCTGCAAA GCGGCTTGCAAAACTATATTTGGCTACCATAACCACAGGAAGTCTTTGTTGGCTTTTTGATCGCTTGTTCTGCAACAACATTTCTCAGTGGTACTTCAAC CCCCAGGGGCATGCTTTATGGCATGTATTGATGGGGTTCAATTCATATTTTGCAAACACATTCCTGATGTTTTGGCGTGCTCAGCAGTTGGGTTGGAATC CAAAAGTTGCCCATTTCATGGGGTTTTTCCCATATGTGAAAATTCAAAAACCAAAGACCCAGTGA
AA sequence Show only first row Show all	>Potri.001G317400.3 pacid=42788030 polypeptide=Potri.001G317400.3.p locus=Potri.001G317400 ID=Potri.001G317400.3.v4.1 annot-version=v4.1 MAEAISSFWGPVTSAEWCEKNYVYSSYIAEFFNTVSIIPGILLALIGLINALRQRFEKRFSVLHISNMILAIGSMLYHATLQRMQQQGDETPMVWEMLLY FYILYSPDWHYRSVMPTFLFLYGAAFAIFHALVRFEIGFKVHYVILCLLCVPRMYKYYIYTKDASAKRLAKLYLATITTGSLCWLFDRLFCNNISQWYFN PQGHALWHVLMGFNSYFANTFLMFWRAQQLGWNPKVAHFMGFFPYVKIQKPKTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.001G317400 [exp]	0	1
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Potri.014G066800 [exp]	2.23	0.9240	GOS12.1
AT1G35780			unknown protein		Potri.005G165500 [exp]	3.00	0.9145
AT2G20840			Secretory carrier membrane pro...		Potri.013G144700 [exp]	5.83	0.9179
AT2G25610			ATPase, F0/V0 complex, subunit...		Potri.018G032600 [exp]	5.91	0.8975
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.006G171500 [exp]	9.94	0.8851
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Potri.001G259200 [exp]	10.48	0.8855
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.018G096077 [exp]	10.95	0.8882
AT1G47830			SNARE-like superfamily protein...		Potri.005G238701 [exp]	11.83	0.8828
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Potri.014G044000 [exp]	12.48	0.8978
AT5G21070			unknown protein		Potri.009G158800 [exp]	12.96	0.8922

Compare expression of checked genes

Potri.001G317400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.