Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31740 886 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G17365 92 / 1e-20 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G04610 94 / 5e-20 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G60910 88 / 4e-19 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G34360 82 / 4e-17 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261000 [exp] 99 / 7e-23 AT3G60910 387 / 2e-137 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G055600 [exp] 93 / 2e-20 AT3G60910 378 / 1e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G150200 [exp] 81 / 2e-16 AT4G34360 385 / 1e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G234600 [exp] 80 / 1e-15 AT5G04610 397 / 1e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G153200 [exp] 74 / 1e-14 AT3G17365 313 / 1e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G073000 [exp] 43 / 0.0006 AT5G44600 331 / 1e-112 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016656 [exp] 986 / 0 AT2G31740 895 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019750 [exp] 90 / 8e-20 AT3G60910 394 / 3e-140 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003963 [exp] 91 / 5e-19 AT5G04610 374 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10023784 [exp] 88 / 4e-18 AT5G04610 389 / 2e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016376 [exp] 81 / 2e-16 AT3G60910 327 / 2e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016375 [exp] 47 / 4e-06 AT3G60910 164 / 7e-52 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017619 [exp] 46 / 7e-05 AT1G66680 471 / 1e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033577 [exp] 45 / 0.0002 AT1G66680 385 / 3e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.001G317700.1 pacid=42788084 polypeptide=Potri.001G317700.1.p locus=Potri.001G317700 ID=Potri.001G317700.1.v4.1 annot-version=v4.1 ATGGGAAAAAAAGACAAACAATCATCGAAAGCTTCAACAGAGGAACTCTTAACAACACTAGGAGACTTCACAAGCAAAGAAAACTGGGACAAATTCTTCA CTATCAGAGGCACTGATGACTCCTTCGAGTGGTACGCCGAGTGGACTGAGCTCCACCATCCCCTCCTCTCTCTTCTCGCCGGAAATGATGAAAACCATTC TTCTTCTTCTTCTCCGCTGCTGAAAATCCTGGTTCCGGGTTGCGGGAATTCGAAGCTGTCAGAGAATTTGTATGATGCAGGGTTTAAGGAGATAACGAAT ATTGATTTCTCGAAAGTTGTGATTTCTGATATGTTGAGAAGGAATGTGAGGGATCGGCCTGGTATGCGGTGGCGTGTCATGGACATGACTCAAATGCAGT TGGCAGATGAGAGCTTTGATGTTGTTCTTGATAAAGGGGGATTGGATGCTTTGATGGAGCCAGAACTTGGCCCGAAGTTGGGAAACCAGTATTTATCAGA GGTGAAAAGAGTGTTGAATTTTGAAGGGAAGTTTATTTGCCTGACGCTTGCAGAATCTCATGTTCTAGCTTTGCTCTTCTCTAAGTTCCGGTTTGGGTGG AAAATGAGTGTTCAGGCTATACCACAGAAACCTTCTAGTAAGCCTGATCTGCGTACATTTATGGTTGTTGCTGAGAAAGAGAATTCTAGTGCTTTGCACT TCATAACGGCATTGTTTGATCACTCTTCTCTTGATTGTATTGGAAATCAGGCTATTGGTCTACATGAAGCCCTTGAAAATGAGAATCAAATTCGTAAAGA ATATTCCATTGGTCCTGATATACTGTACTCTCTTGAAGATCTGTTAATTGGAGCTAAAGGTGACTTGTCAAAGCTTAGCCTAGGTCGTCGTTTTCAGCTT ACTTTGGGAGGGAATGGCGACTCCCGGTTTAGTTACAAAGCCATAGTTCTTGATGCCAAGGAAAGCTCTAGCCAATTCACTTATCATTGTGGGGTTTTCA TTGTGCCAAAGACTCGAGCTCATGAATGGCTCTTCTCTTCAGAAGAAGGACAGTGGCTAGTTGTTGAAAGCTCAAAGGCAGCTCGTTTAATAATGATTAT AATGGACAGTAGCCACAATAATGCCAGCATGGATGATATTCAGAAGGATTTATCTCCTCTGGTTAAACAGTTGGCACCTGGAAAAGATGACAATTCAGCA CAAATTCCTTTCATGATGGCAGGTGATGGAATCAAAGAACGAAAAACTGTGCATAAGGTTACCTCTTCATTAACTGGGTCAATAATTGTTGAAGACGTGG TTTATGAAAATGTTGCTGATGATGTCAGTCGTCCTTTTCCATCTAGTGATTTGATATTCCGCCGCCTTGTTTTCCAAAGAGCAGAGGGTCTTGTTCAGTC TGAAGCTCTTCTTACAAGGGATGAATCTTCTCATAAAATTGTTGAAGAGAAGAAGAAAACTAGTTCTTCCAAATCGAAGAAAAAGGGAAGCCAGAAACGG AATGATGCATCAAGCAAGATACTGAAGGTATATCATGATTATATGGCCAGCTCTTATCATATGGGAATTGTTTCTGGCTTTACGTTGATGTCTTCTTATT TGGAAAGTGTGGAATCGACTGGAAAAACAGTTAATGCTGTTATCATCGGTCTTGGAGCTGGCTTACTTCCCATGTTTCTCCATGGATGCATGCCTTCTTT GCAGATTGAGGTGGTGGAGTTGGATGCTGTGGTACTTAGCCTTGCAAGGGATTACTTTGGTTTTGCAGAAGATGAACGTTTGAAGGTACATATTGCTGAT GGGATAAGGTTTGTTAGAGAGGTAAAAAACTTCGCTGTGGCTGATGGATTGCCTGCCATCCATGGAATTGAGGATGCTTCTGGAAGTACAAAGCCTTCAC CTGATGAAAGTGGCAGTGTGTCTTACACAGAGGGCAGAGGAAGACCTAGAGTTGACATACTTATCATTGACGTGGACTCTTCAGACTCGAGCTCAGGAAT GGCCTGTCCAGCTGCAGATTTTGTGGAAGAGTCTTTTCTTTTGACTGTAAAAGATACCCTTTCTGAGCAAGGTCTCTTCATTGTCAATTTGGTGTCAAGG TCCCCAGCTGTTAAAGATACAATTATTTCAAGGATGAAAGCGGTCTTCAACCACCTGTTTAGCCTTCAGCTTGAGGAAGACATCAACATGGTTCTCTTTG GCCTTTGTTCGGAAGTTTGCTTGAAGGAGGATTGCTTCCCCGAGGCTGCCTGTCAGCTTGACAAACTGTTGAAGTTCAAACACCAGGAAATAGGCCAAAG CATTATAGATTCAACAAAGAAGATCAGACGTTTAAAATGA
AA sequence Show only first row Show all	>Potri.001G317700.1 pacid=42788084 polypeptide=Potri.001G317700.1.p locus=Potri.001G317700 ID=Potri.001G317700.1.v4.1 annot-version=v4.1 MGKKDKQSSKASTEELLTTLGDFTSKENWDKFFTIRGTDDSFEWYAEWTELHHPLLSLLAGNDENHSSSSSPLLKILVPGCGNSKLSENLYDAGFKEITN IDFSKVVISDMLRRNVRDRPGMRWRVMDMTQMQLADESFDVVLDKGGLDALMEPELGPKLGNQYLSEVKRVLNFEGKFICLTLAESHVLALLFSKFRFGW KMSVQAIPQKPSSKPDLRTFMVVAEKENSSALHFITALFDHSSLDCIGNQAIGLHEALENENQIRKEYSIGPDILYSLEDLLIGAKGDLSKLSLGRRFQL TLGGNGDSRFSYKAIVLDAKESSSQFTYHCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMIIMDSSHNNASMDDIQKDLSPLVKQLAPGKDDNSA QIPFMMAGDGIKERKTVHKVTSSLTGSIIVEDVVYENVADDVSRPFPSSDLIFRRLVFQRAEGLVQSEALLTRDESSHKIVEEKKKTSSSKSKKKGSQKR NDASSKILKVYHDYMASSYHMGIVSGFTLMSSYLESVESTGKTVNAVIIGLGAGLLPMFLHGCMPSLQIEVVELDAVVLSLARDYFGFAEDERLKVHIAD GIRFVREVKNFAVADGLPAIHGIEDASGSTKPSPDESGSVSYTEGRGRPRVDILIIDVDSSDSSSGMACPAADFVEESFLLTVKDTLSEQGLFIVNLVSR SPAVKDTIISRMKAVFNHLFSLQLEEDINMVLFGLCSEVCLKEDCFPEAACQLDKLLKFKHQEIGQSIIDSTKKIRRLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31740			S-adenosyl-L-methionine-depend...		Potri.001G317700 [exp]	0	1
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.013G008900 [exp]	1.00	0.9145	Pt-LON_ARA_ARA.1
AT1G28210		ATJ1	DNAJ heat shock family protein...		Potri.005G160200 [exp]	5.65	0.8673
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Potri.011G093000 [exp]	7.00	0.8098	TIM50.1
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Potri.001G473100 [exp]	10.81	0.8475	PEX5.2
AT1G68990		MGP3	male gametophyte defective 3 (...		Potri.008G112800 [exp]	16.09	0.8198
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Potri.002G255300 [exp]	16.61	0.8417
AT5G17370			Transducin/WD40 repeat-like su...		Potri.001G075300 [exp]	16.97	0.7758
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.004G235900 [exp]	20.37	0.7865	Pt-ATRLI1.1
AT1G54050			HSP20-like chaperones superfam...		Potri.003G071100 [exp]	21.44	0.8672
AT1G66510			AAR2 protein family (.1.2.3)		Potri.017G123900 [exp]	21.49	0.8556

Compare expression of checked genes

Potri.001G317700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.