Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23910 380 / 2e-129 unknown protein AT3G24255 353 / 6e-119 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022568 [exp] 456 / 5e-159 AT3G23910 336 / 4e-112 unknown protein Lus10016653 [exp] 437 / 8e-152 AT3G23910 328 / 3e-109 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G317900.1 pacid=42788864 polypeptide=Potri.001G317900.1.p locus=Potri.001G317900 ID=Potri.001G317900.1.v4.1 annot-version=v4.1 ATGGAAATCTCTCCCTCAACGACACAAGAATCTCTCAATCTGAATACAATTCGCAGTCGAATAAATGAACTTGAAGAAATCTACAGAGATTGCAATGCAG ATAGTTTCTCCGAAATAAACTCTTCTGATTCTGATGAATTAATGAAAGATTCCGCTCAGCAACTTGTGAGCAAAGTGAGTCAAACCGTAACCGAGTACTC CGATTTCAGTTTCCTAGGCATTGAAGATTTAGATGCATACTTAGCACACTTGAAAGAGGAGCTTGACGCGGCAGAGGCTGAGAGTGCAAAGATCTCTAAT GAAATTGAGTTGCTCAATAGAACATGTATGGAAGATTCTAGTGAACTAGAGAATGATCTTGAATGGATGAAGTGTTCGTTGGATTTAATTTCTTCACAGC GGGATCGAGAGAAAGAAAAAGGAGATGAACAGATGGAGCACTTTTCAAGTGGAGAAAATCAATCAAATTTGATAAACACAAATGAAGAAAACAAGTTTGA GATTTTGAAGCTCGATAATCAGATTGAGGAAAGCACAAGGATTTTGAAGTCCATGCAGGATCTTGATTCCGTATGCAAATGGTATGATGCCATAGAACAA ATTGAAGATGTATTGTCGGGTCTGAAAGTCATTGAATTTGATGGAACCTGCATTAGATTGTCATTGCGGACTTATATTCCAAAACAAGATGTATTGTTCC TACAGAAGATTGAAGAAACTAATGTGCCATATGAAATAAACCATGAATTTCTCATAGAAGTTACCAATGGAAGTATGGAGATTAAGAAAGTTGAGATGTT TCCGAATGACATATATATAGGAGACATTGTTGATGCTGCAAAGTCTTTCAGGCAAATGTTTTTGCACTTGGCATTGATGGAGACAAGCTCTTCACTGGAG TGGTTTGTAAGAAAAGCTCAAGATAGAATTATTCAGTCTACTTTGAGACGATTGGTGGCAAGGAGTGCAAGTACATCCAGGCAATCCATTGAATACTTGG ACAGAGATGAAATAATAGTTGCTCATATGGTTGGGGGTGTTGACGCTTTTATGGAAGTTTCTCAGGGTTGGCCCATAACAAATTCCCCATTGAAATTGGT ATCTCTCAAGAACGCAAATCACCATGCAAAGGAAATTTCGTTGGGCTTTCTCTGCAAGGTTGAGGAAGCGGCGAACTCCTTGGATGTACACACGCGGCAG AACTTGTCAAGCTTTGTAGACTCTGTTGAAAAAATTCTTGTAGAACAAATGCACTTGGAACTGCATTCAGATGGTACTTCTAGCATATGA
AA sequence Show only first row Show all	>Potri.001G317900.1 pacid=42788864 polypeptide=Potri.001G317900.1.p locus=Potri.001G317900 ID=Potri.001G317900.1.v4.1 annot-version=v4.1 MEISPSTTQESLNLNTIRSRINELEEIYRDCNADSFSEINSSDSDELMKDSAQQLVSKVSQTVTEYSDFSFLGIEDLDAYLAHLKEELDAAEAESAKISN EIELLNRTCMEDSSELENDLEWMKCSLDLISSQRDREKEKGDEQMEHFSSGENQSNLINTNEENKFEILKLDNQIEESTRILKSMQDLDSVCKWYDAIEQ IEDVLSGLKVIEFDGTCIRLSLRTYIPKQDVLFLQKIEETNVPYEINHEFLIEVTNGSMEIKKVEMFPNDIYIGDIVDAAKSFRQMFLHLALMETSSSLE WFVRKAQDRIIQSTLRRLVARSASTSRQSIEYLDRDEIIVAHMVGGVDAFMEVSQGWPITNSPLKLVSLKNANHHAKEISLGFLCKVEEAANSLDVHTRQ NLSSFVDSVEKILVEQMHLELHSDGTSSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23910			unknown protein		Potri.001G317900 [exp]	0	1
AT2G32520			alpha/beta-Hydrolases superfam...		Potri.014G155200 [exp]	1.41	0.7987
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.001G032800 [exp]	4.58	0.7129
AT4G27745			Yippee family putative zinc-bi...		Potri.001G085400 [exp]	5.47	0.7610
					Potri.009G144550 [exp]	11.61	0.7237
AT5G59100			Subtilisin-like serine endopep...		Potri.009G037900 [exp]	24.61	0.7228
AT1G04590		EMB2748	unknown protein		Potri.016G102800 [exp]	26.53	0.7020
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Potri.014G094300 [exp]	33.40	0.6987	RRP41.1
AT3G08880			unknown protein		Potri.012G107200 [exp]	34.98	0.6791
AT1G32410			Vacuolar protein sorting 55 (V...		Potri.003G087500 [exp]	36.66	0.6932
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Potri.015G064000 [exp]	37.30	0.6739

Compare expression of checked genes

Potri.001G317900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.