Plant FIBer expression Database

Potri.001G318001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G088025
[exp]
39 / 0.0002 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G318001.1 pacid=42790652 polypeptide=Potri.001G318001.1.p locus=Potri.001G318001 ID=Potri.001G318001.1.v4.1 annot-version=v4.1
ATGCCATTACCGAGGCACGAACGAAGAACGAAAACAAAGGGAAAGAAAACAGAAAGGACCCCGGGGATAAACAGAGGACGAACAAAAACAAGAACAGGGG
ACAGACACAAAGTGGACACAAAGAACATAAGGAGTGAACGATACACACAGAAGGCGAAAGGAAGGACGAGCAAAAACAGGAGAACAAAGCAACAAAAAAA
AAATGACCCAGTGAAGGAAGATCGGAGAGTAAGCAAAGGAAAAACAGAAACAGAGAGAGGAAAGCACTGGCCAGCCAACGCACGAGCACTAGCTTTGCCT
CCAAGTATACCAGCCCCCCCCGGCTCTCCCCCTTTGAATAACAGATCAGAAAAGAAACACAAGCGAACAAACACAGACGAAGAAGAAAAAAAACAGAGGA
CCGAAACCAGTAGAAAGAGAGGACAAACCAGAACAAAAAAAGAAAGCAACAGAATATAA
AA sequence
>Potri.001G318001.1 pacid=42790652 polypeptide=Potri.001G318001.1.p locus=Potri.001G318001 ID=Potri.001G318001.1.v4.1 annot-version=v4.1
MPLPRHERRTKTKGKKTERTPGINRGRTKTRTGDRHKVDTKNIRSERYTQKAKGRTSKNRRTKQQKKNDPVKEDRRVSKGKTETERGKHWPANARALALP
PSIPAPPGSPPLNNRSEKKHKRTNTDEEEKKQRTETSRKRGQTRTKKESNRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G318001
[exp]
0 1
AT5G07270 XBAT33 XB3 ortholog 3 in Arabidopsis ... Potri.015G141400
[exp]
14.56 0.6604
AT2G35380 Peroxidase superfamily protein... Potri.001G145800
[exp]
32.03 0.6555
AT4G33180 alpha/beta-Hydrolases superfam... Potri.006G219400
[exp]
34.78 0.6575
AT2G25430 epsin N-terminal homology (ENT... Potri.018G026900
[exp]
39.57 0.6152
Potri.019G016702
[exp]
47.71 0.6424
AT4G13550 triglyceride lipases;triglycer... Potri.008G174300
[exp]
50.07 0.5780
Potri.008G176700
[exp]
121.74 0.5376
AT2G20800 NDB4 NAD(P)H dehydrogenase B4 (.1) Potri.013G147300
[exp]
137.76 0.5793
AT1G03530 ATNAF1 nuclear assembly factor 1 (.1) Potri.019G104400
[exp]
144.30 0.5234
AT5G06100 MYB ATMYB33 myb domain protein 33 (.1.2.3) Potri.013G130900
[exp]
215.20 0.5138

Potri.001G318001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.