Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42860 211 / 1e-65 zinc knuckle (CCHC-type) family protein (.1) AT5G13920 67 / 2e-12 GRF zinc finger / Zinc knuckle protein (.1) AT1G54930 52 / 3e-07 GRF zinc finger / Zinc knuckle protein (.1) AT3G43590 52 / 4e-07 zinc knuckle (CCHC-type) family protein (.1) AT4G36020 47 / 1e-05 CSDP1 cold shock domain protein 1 (.1) AT2G21060 42 / 0.0002 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) AT2G17870 42 / 0.0003 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) AT3G53500 42 / 0.0003 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT2G37340 42 / 0.0004 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125504 [exp] 78 / 5e-16 AT5G13920 106 / 1e-25 GRF zinc finger / Zinc knuckle protein (.1) Potri.T125604 [exp] 77 / 2e-15 AT5G13920 115 / 1e-27 GRF zinc finger / Zinc knuckle protein (.1) Potri.009G112676 [exp] 77 / 2e-15 AT5G13920 116 / 7e-28 GRF zinc finger / Zinc knuckle protein (.1) Potri.009G155500 [exp] 45 / 3e-05 AT3G43590 286 / 9e-89 zinc knuckle (CCHC-type) family protein (.1) Potri.005G112800 [exp] 43 / 0.0001 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.007G057100 [exp] 43 / 0.0001 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1) Potri.005G067100 [exp] 43 / 0.0003 AT5G63920 1389 / 0.0 topoisomerase 3alpha (.1) Potri.009G094001 [exp] 41 / 0.0003 AT3G42860 44 / 3e-05 zinc knuckle (CCHC-type) family protein (.1) Potri.006G215200 [exp] 41 / 0.0009 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030560 [exp] 208 / 4e-64 AT3G42860 258 / 1e-82 zinc knuckle (CCHC-type) family protein (.1) Lus10012906 [exp] 139 / 4e-38 AT3G42860 184 / 1e-54 zinc knuckle (CCHC-type) family protein (.1) Lus10025368 [exp] 43 / 7e-05 AT3G42860 44 / 1e-05 zinc knuckle (CCHC-type) family protein (.1) Lus10020975 [exp] 43 / 9e-05 AT5G13920 42 / 5e-05 GRF zinc finger / Zinc knuckle protein (.1) Lus10041902 [exp] 44 / 0.0001 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1) Lus10008437 [exp] 44 / 0.0001 AT3G43590 264 / 4e-80 zinc knuckle (CCHC-type) family protein (.1) Lus10013378 [exp] 44 / 0.0002 AT3G43590 256 / 1e-74 zinc knuckle (CCHC-type) family protein (.1) Lus10028073 [exp] 41 / 0.0005 AT4G36020 115 / 3e-31 cold shock domain protein 1 (.1) Lus10015039 [exp] 42 / 0.0006 AT3G53500 256 / 8e-85 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10003987 [exp] 42 / 0.0006 AT3G53500 255 / 2e-84 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0167 [poplar] [flax] Zn_Beta_Ribbon PF06839 [poplar] [flax] zf-GRF GRF zinc finger
Representative CDS sequence Show only first row Show all	>Potri.001G318100.1 pacid=42787943 polypeptide=Potri.001G318100.1.p locus=Potri.001G318100 ID=Potri.001G318100.1.v4.1 annot-version=v4.1 ATGAAATCCAAAAGAGAAACGACAGTAATCGAAATCGAAGACACAGACGACGATGATTTCCTTTCTCAAGTTGCCCAAGCTGAGTCCGAAGCTCTCTCCG CTTCCAACATCAAACGCCGCAAAATCACCACCGTAGGTTTCAACGAAAACCAAGAGAACACCAAAACCACGACGACGACGATCAAAGTGAAGGACGAATA CAAAAATGAAGGGGACTACATGGCAGCTTTAAAAGGAAGTAAAAGTACTTTATGGCAACAGCGAATCAAAGCCGTTGGTTCTTCCAAACTCCCTCCTCCT GATTACAATGCTCGCGGTGGCGGTGGCGGTGGCAGTGGGGCGGTGGCTCCCGAGAAGGTGTGTCCTTGTGGGTTGGGTGTTTGTAATGTTTTTACTGCTA ATACTGAAAGGAATCGCGGGCGGGATTTCTACAAATGCCCTCAAAGACAGGAAAGTGGGGGTTGTGGATTTTTTCAATGGTGTGATGAATCTCCAGCGGC AAATAATGGTGGTGGGTTCGGTGGGGGTGGGAGCCATGGTTCTGTGTCTAATTCTGTGTTTCCTGAGCTTCAATGTTCATGTGGAGCTGGGTCTTGCTTG ATTTTGACGTCTAGAAAAGGGGACAATAATGGGAAGCAATTCTATAAATGTCCTGAAAATCAGGGAGGTTGTGGTTTCTTCAAATGGTGCGATGATAATA CTGCATCAGCTGGTCTTCAAGCTAGTGCTCCCAAGGTCTATATCAACATGAATGACTCCAGCAACAAAAGCTTTGGTGCAAGAACCGGATCATCCTGCTT CAAATGTGGCAAGGAAGGCCATTGGGCAAAAGATTGTGGCATGTCTACGTCTGATTCTCCTGCTACATTTGGAGCAGGTTCTGGTTCATCTGGTACTTGT TACAAATGTGGTAAGCCAGGGCATTGGGCAAGGGACTGCACTTCTAGTCAATATAAGAATGTTCCCCAGCAATACTAA
AA sequence Show only first row Show all	>Potri.001G318100.1 pacid=42787943 polypeptide=Potri.001G318100.1.p locus=Potri.001G318100 ID=Potri.001G318100.1.v4.1 annot-version=v4.1 MKSKRETTVIEIEDTDDDDFLSQVAQAESEALSASNIKRRKITTVGFNENQENTKTTTTTIKVKDEYKNEGDYMAALKGSKSTLWQQRIKAVGSSKLPPP DYNARGGGGGGSGAVAPEKVCPCGLGVCNVFTANTERNRGRDFYKCPQRQESGGCGFFQWCDESPAANNGGGFGGGGSHGSVSNSVFPELQCSCGAGSCL ILTSRKGDNNGKQFYKCPENQGGCGFFKWCDDNTASAGLQASAPKVYINMNDSSNKSFGARTGSSCFKCGKEGHWAKDCGMSTSDSPATFGAGSGSSGTC YKCGKPGHWARDCTSSQYKNVPQQY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42860			zinc knuckle (CCHC-type) famil...		Potri.001G318100 [exp]	0	1
AT5G05800			unknown protein		Potri.001G243108 [exp]	7.54	0.8850
AT5G53540			P-loop containing nucleoside t...		Potri.012G027901 [exp]	10.39	0.8723
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.005G126700 [exp]	10.48	0.8483
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.009G157000 [exp]	19.89	0.8484
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.014G155401 [exp]	21.54	0.8422
AT1G19880			Regulator of chromosome conden...		Potri.002G025600 [exp]	23.97	0.7816
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.008G188700 [exp]	28.98	0.8203
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Potri.015G126800 [exp]	29.12	0.7854	CBP.1
AT3G22425		HISN5A, IGPD	imidazoleglycerol-phosphate de...		Potri.008G152701 [exp]	29.47	0.8310
					Potri.017G119750 [exp]	37.14	0.8259

Compare expression of checked genes

Potri.001G318100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.