Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 140 / 8e-38 F-box family protein (.1) AT4G12560 132 / 5e-35 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT4G22390 104 / 1e-24 F-box associated ubiquitination effector family protein (.1) AT1G47790 86 / 2e-18 F-box and associated interaction domains-containing protein (.1) AT3G21120 86 / 2e-18 F-box and associated interaction domains-containing protein (.1) AT3G17480 85 / 4e-18 F-box and associated interaction domains-containing protein (.1) AT1G12170 84 / 6e-18 F-box family protein (.1) AT3G16210 83 / 2e-17 F-box family protein (.1) AT4G21240 83 / 3e-17 F-box and associated interaction domains-containing protein (.1) AT5G49610 82 / 3e-17 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G058000 [exp] 464 / 1e-164 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.001G318400 [exp] 340 / 2e-115 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.017G058900 [exp] 214 / 3e-66 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.008G199800 [exp] 141 / 8e-38 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.006G013000 [exp] 133 / 4e-35 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G215800 [exp] 121 / 8e-31 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.006G013200 [exp] 120 / 1e-30 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G458400 [exp] 118 / 8e-30 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 117 / 1e-29 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038603 [exp] 123 / 2e-31 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10008870 [exp] 114 / 2e-28 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10008871 [exp] 110 / 8e-27 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038606 [exp] 108 / 2e-26 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10023239 [exp] 107 / 9e-26 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1) Lus10023238 [exp] 102 / 5e-24 AT3G23880 126 / 6e-33 F-box and associated interaction domains-containing protein (.1) Lus10037892 [exp] 101 / 8e-24 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10039024 [exp] 100 / 2e-23 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10026587 [exp] 99 / 9e-23 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10040463 [exp] 93 / 8e-21 AT4G12560 117 / 7e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0162 [poplar] [flax] FBA PF07734 [poplar] [flax] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Potri.001G318300.1 pacid=42787907 polypeptide=Potri.001G318300.1.p locus=Potri.001G318300 ID=Potri.001G318300.1.v4.1 annot-version=v4.1 ATGTCAAAACTCCCCCAAGACATTATTGTTGATATCCTTACCTACTTGCCAGTCAAGTCTCTTGTTAGATTCAAGTGTGTGTGCAAGCCATGGCAGTTGT TAATCTCCGACCCTCGATTCGTCAAGTTGCATCTCAAACGGGCAATTGAAGGCAACAATATTAACCGCCAAAGGCTCCTTGTTGCGGCCGAGCCTCTTTA TAGTTCTGTAGACTTTGAAGCAGCTAGTGATGGTGATGGCATTAATGCAGTAATGGAGCTTCCTTATCCTAGCGCAGCAAGTCGTACTGAATCCTTCGCT TTTGCATCGATCCGGGGATCTTGTGATGGTTTAGTATGTATACGTAATGGAGGTGACGTTCACGATATGTTTTTATGGAATCCATCTACTAGAGAGTCCA AGAAATTGCCAAAACCAAGTTCTTCTGTGCAGAAACATGGTTTCCTTACTGGACTTGGTTATGATTCAACTATCGACGATTACAAATTAGTAATTGCCTG CTTAACTACTGCCAATGGTTCTCACCAAATTATGGCGCCTGAAGTCTTCACCCTCAAAACCAATTCATGGAGAAGAATTCAAGGCATCCATTCTGGTATC ACCTTGGAAGGAGGTGCAGGAGTATTTTGGAACGGGGCTTTGCATTGGTTAGGGAAGCAAGAAACAGGTGCTGATCATGATGTGGATGTTATTTTTTCGC TTGACGTAGCACAGGAGAAGTTCATGGGGTTTGTGCCCCTTCCGAACCATTTTTGTACAGCTGTTTTGAGCATCTCAGGAAATTGCTTGTGCATTTTTGG CAAACTGCATCCTGATGAAAGCTACTTCGAGGCATGGATAACAAGTGAATACGGAGTCAAGACATCTTGGAGAAGACGGTATGCTATTCCTTTTGACAGA TTATATATGGATTATTTTTCAACAGAAATGTGCTTGACGAAGAAAGGAGTTCTAATGGACCATCATGGATGTCCAGGGACATTGCAGCTTTACGACCCAG TTGAAGATGCAACAAAGTTATTAAGAGTAAAAAACAATAGGGATCCCATGTATGATTCTGCTGTATATACAGAAAGCCTTGTTTCACTACGATAA
AA sequence Show only first row Show all	>Potri.001G318300.1 pacid=42787907 polypeptide=Potri.001G318300.1.p locus=Potri.001G318300 ID=Potri.001G318300.1.v4.1 annot-version=v4.1 MSKLPQDIIVDILTYLPVKSLVRFKCVCKPWQLLISDPRFVKLHLKRAIEGNNINRQRLLVAAEPLYSSVDFEAASDGDGINAVMELPYPSAASRTESFA FASIRGSCDGLVCIRNGGDVHDMFLWNPSTRESKKLPKPSSSVQKHGFLTGLGYDSTIDDYKLVIACLTTANGSHQIMAPEVFTLKTNSWRRIQGIHSGI TLEGGAGVFWNGALHWLGKQETGADHDVDVIFSLDVAQEKFMGFVPLPNHFCTAVLSISGNCLCIFGKLHPDESYFEAWITSEYGVKTSWRRRYAIPFDR LYMDYFSTEMCLTKKGVLMDHHGCPGTLQLYDPVEDATKLLRVKNNRDPMYDSAVYTESLVSLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06240			F-box family protein (.1)		Potri.001G318300 [exp]	0	1
AT4G09580			SNARE associated Golgi protein...		Potri.013G113000 [exp]	3.74	0.6520
AT5G07610			F-box family protein (.1)		Potri.013G110300 [exp]	5.09	0.6728
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Potri.001G334900 [exp]	5.19	0.6495
AT1G23550		SRO2	similar to RCD one 2 (.1)		Potri.018G055100 [exp]	35.09	0.6042
AT5G07610			F-box family protein (.1)		Potri.013G109900 [exp]	45.05	0.6493
AT4G32640			Sec23/Sec24 protein transport ...		Potri.005G049100 [exp]	47.83	0.6069	CEF.1
AT3G54850		ATPUB14	plant U-box 14 (.1)		Potri.010G226500 [exp]	55.47	0.5813
AT1G72810			Pyridoxal-5'-phosphate-depende...		Potri.001G199100 [exp]	59.49	0.5805
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.001G219250 [exp]	61.33	0.6232
					Potri.007G039601 [exp]	67.17	0.6324

Compare expression of checked genes

Potri.001G318300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.