Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 142 / 2e-38 F-box family protein (.1) AT4G12560 114 / 4e-28 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G23880 98 / 1e-22 F-box and associated interaction domains-containing protein (.1) AT4G22390 95 / 2e-21 F-box associated ubiquitination effector family protein (.1) AT1G47790 91 / 4e-20 F-box and associated interaction domains-containing protein (.1) AT3G16210 90 / 8e-20 F-box family protein (.1) AT1G11620 89 / 2e-19 F-box and associated interaction domains-containing protein (.1) AT3G08750 88 / 5e-19 F-box and associated interaction domains-containing protein (.1) AT4G10190 86 / 3e-18 F-box and associated interaction domains-containing protein (.1) AT3G16740 84 / 1e-17 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G318300 [exp] 339 / 4e-115 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.017G058000 [exp] 329 / 3e-111 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.017G058900 [exp] 225 / 1e-70 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.008G199800 [exp] 145 / 2e-39 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.012G014300 [exp] 127 / 3e-33 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.006G013000 [exp] 127 / 8e-33 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 122 / 3e-31 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G099733 [exp] 119 / 4e-30 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.006G010800 [exp] 117 / 2e-29 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008871 [exp] 121 / 7e-31 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10008870 [exp] 120 / 2e-30 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10038603 [exp] 117 / 4e-29 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10023239 [exp] 115 / 1e-28 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1) Lus10023238 [exp] 113 / 6e-28 AT3G23880 126 / 6e-33 F-box and associated interaction domains-containing protein (.1) Lus10026587 [exp] 104 / 1e-24 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10037892 [exp] 100 / 3e-23 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10031020 [exp] 100 / 3e-23 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10006687 [exp] 99 / 3e-23 AT4G12560 81 / 5e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038606 [exp] 99 / 5e-23 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0162 [poplar] [flax] FBA PF07734 [poplar] [flax] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Potri.001G318400.1 pacid=42789632 polypeptide=Potri.001G318400.1.p locus=Potri.001G318400 ID=Potri.001G318400.1.v4.1 annot-version=v4.1 ATGTCCAAACTCCCTCAGGACATCATGGTTGATATACTCACTTACCTACCAGTTAAGTCCCTACTACGATTCAAGTGTGTGTGCAAGCTATGGCATTCGT TAATCTCGGATCCGAAGTTTGTGAAATCACACCTCAAAACAGCAAGGGAAGTCAACTCTAATAAGAGCCAGAGACTTCTCCTTTCAACCAGGACTCCTCA GTCCGTTGACTTCGAAGCAGCTAGTGAAGGTGATGAGGATAATGCAGTACAGGAGCTTGAATATCCTGATGTAGTAAGGTGCAGTCCTACTTACTTTATT GGAATTATGGGATCTTGCGATGGCTTGATTTGTTTATTTGTTGACTATGCAAAACTCGTCTTATGGAATCCATCTACTAGAGATTACAAGGAAATGCCAA AACCCAGTTGTGATCATGGCTTTGATTTCTTTGCTGGAATTGGTTATGATTCCTCTAATGATGATTATAAATTTGTAATTCCTAGCTGCACTACGGCTGA TGGTTCTGAACAAATTATGGTTGAAGTTCTTACATTGAAAACCAATGTCTGGAGAAAAGTCCCGGAGATCTGTCAAGGTACTACCTTGGTAGGGGCTTAT CGAGGGTTATTTTGCAATGGGGCTGTGCATTGGTTAGGAAAGCAAGAAAATGGGTCTGAGAAAGAGTATGTGGCTGTTTCATTTGATGTAGCAGAGGAGA GATTCAAGGAAGTTGTGCCACTTCCGGATCATTTCGATACGGTGGTTTTGGGGATGTCAGGAAATTCCCTGTGTGCATTTGGTGAATGCCATGGAAGCTA TTTTGAGGCATGGATACATGAGCAGGAATATGATAGCAGTGCATCTTTCAGAAGATTATTCAGGCTCCCAGCTGACAGGCTTTCTCAAGAACCTAAAGTA GTATTGTGTTTAACAAAGAAAGGAGAACTTCTGCTTGATTATGATGAATGGCAACTAGCGTTGTACCATCCTGTAGCAGACAAAAATAAATGCATCAGGG CATACAGAGATAGCAATTTATGTGATTTAGCAATATACACAGAGAGTCTAGTTTCCATCAATGGTGATGACAGTAGAGACCCCAGAAGAAGATGTTGGAG AAAAATGGTGATTGCCTAA
AA sequence Show only first row Show all	>Potri.001G318400.1 pacid=42789632 polypeptide=Potri.001G318400.1.p locus=Potri.001G318400 ID=Potri.001G318400.1.v4.1 annot-version=v4.1 MSKLPQDIMVDILTYLPVKSLLRFKCVCKLWHSLISDPKFVKSHLKTAREVNSNKSQRLLLSTRTPQSVDFEAASEGDEDNAVQELEYPDVVRCSPTYFI GIMGSCDGLICLFVDYAKLVLWNPSTRDYKEMPKPSCDHGFDFFAGIGYDSSNDDYKFVIPSCTTADGSEQIMVEVLTLKTNVWRKVPEICQGTTLVGAY RGLFCNGAVHWLGKQENGSEKEYVAVSFDVAEERFKEVVPLPDHFDTVVLGMSGNSLCAFGECHGSYFEAWIHEQEYDSSASFRRLFRLPADRLSQEPKV VLCLTKKGELLLDYDEWQLALYHPVADKNKCIRAYRDSNLCDLAIYTESLVSINGDDSRDPRRRCWRKMVIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06240			F-box family protein (.1)		Potri.001G318400 [exp]	0	1
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.006G062500 [exp]	3.46	0.9534
AT1G16260			Wall-associated kinase family ...		Potri.003G186100 [exp]	6.00	0.9508
AT5G51160			Ankyrin repeat family protein ...		Potri.012G113800 [exp]	6.32	0.9518
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Potri.008G080000 [exp]	8.12	0.9442
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G040200 [exp]	8.66	0.9494
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Potri.012G089600 [exp]	10.00	0.9297
AT2G42440	AS2		Lateral organ boundaries (LOB)...		Potri.002G041100 [exp]	10.58	0.9420
AT5G01830			ARM repeat superfamily protein...		Potri.006G107600 [exp]	11.48	0.9364
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028500 [exp]	15.87	0.9356
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010700 [exp]	16.15	0.9395

Compare expression of checked genes

Potri.001G318400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.