Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G058200 [exp] 598 / 0 ND / Potri.004G088000 [exp] 151 / 4e-41 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032068 [exp] 320 / 2e-105 ND / Lus10014600 [exp] 315 / 1e-103 ND / Lus10010972 [exp] 146 / 3e-39 ND / Lus10031351 [exp] 144 / 1e-38 ND / Lus10032091 [exp] 43 / 0.0004 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G318600.1 pacid=42791476 polypeptide=Potri.001G318600.1.p locus=Potri.001G318600 ID=Potri.001G318600.1.v4.1 annot-version=v4.1 ATGATGCCACCAAAAAGAAAGAAATGGACAGAAGTAGAAGAGAAAACCCTAATTGAGAAATATGGAGAGATGGTCTCTGATGGGACCCTTGCAAAAATGA AAACTAGAGAGAAGAAATATAAACCAATTGCTTTGTATGTGAATTCTGCGCATCATGTTCGTGATCCGATTGCTTACCCTTGGCAATGGACATGGAAAGA TGTGTCTACTAAGGTGCAAAACATGAGGCACCAGTACTTGCTTGTTAAGCAAAAGATTAAGAAACCTGAGTTTTCATCAATGGACAATTCAGGTTGTGGT GGTGGAGAGTGTAGTGGCAATGGGGATGAGTTTGATTGGTTGGAAGGGCGCACACATTGGTCGAATTTTTTGCTGTACAAGGAGGTTTTTGGGGATCTTC CAGTTTCTTATGGAACTAATGGTAGTAATTGTAATGATTTGATGGGGGTCTTGAATGAGGATAGGGAGAATGGTGGGGGTTTGTTAGGGGGTGTCAGGGG AATGGAGATGGCAGAGTTTGGCCAACTAGGTAATTCGGCTGATGGGGATTTTGCTGGGATTGATGGGGGTGAGAATGGGGTGCTGGGTTTGGGGTTTGAT TATGAAGGGGAAGAGGCAGAGGAGAATTGTAATGGTAATGATCGGGTGAGGGAGGATGGAGATGATGGTTTCATGTATGAAGAAGTGGAGCCAAATGTGT CTAATTTGAGGAAAAAGAGGAAGGCACTGAAGGGATTCCAGAAAAGGGTGTTTGGATTTCTATCAAACCAGTTGGTGCAGTTGAGGGACATGGAGGCTCG GTTTGAGCAACGTGAGCTGGAGAGAGAGCGGGAGAGGCAAGGAAGAGAGAATGTCCTGGTGGAGAGGGAGCAAGAATGGGAACGGAAGTTGGAAGAAAGG GAAAAGAAGAGGGAAGAGATGGAAAAGGATAGGGAAAAGTTAACGAGGCAGAGGATTCAAGAATGGGAAGCTATGGAGAAGGAGAGCGAAGAGAGGGAAA GAAGAAGAAGAGAGGAGGAGTTGATTCAAGAGAGGGAATGGGAAGATAGGATGAATAGGAAGAGGTCAGAATGGAAGAAGAGGATTGATGAGATGTTGAG TCAGCACCGAGCAGAAATGGGGCAGTTCCAGACTCGTATTCTTCATGAGCAACAAAACCTTACTGGCCAGTTGCTTGGGATTGTTTCACAATGGACTACT CCAACTGGGCTCTCTGATCATACTGGTGCTAGCAACCATTATCTTTCACAAATGATGCATAATTTGCACCATGTAAATGGTATGGTTCATGGGGACAGTA GGGTTGATGGAGATACTCAGGATGACCAATTTATTGTTGATGGATGA
AA sequence Show only first row Show all	>Potri.001G318600.1 pacid=42791476 polypeptide=Potri.001G318600.1.p locus=Potri.001G318600 ID=Potri.001G318600.1.v4.1 annot-version=v4.1 MMPPKRKKWTEVEEKTLIEKYGEMVSDGTLAKMKTREKKYKPIALYVNSAHHVRDPIAYPWQWTWKDVSTKVQNMRHQYLLVKQKIKKPEFSSMDNSGCG GGECSGNGDEFDWLEGRTHWSNFLLYKEVFGDLPVSYGTNGSNCNDLMGVLNEDRENGGGLLGGVRGMEMAEFGQLGNSADGDFAGIDGGENGVLGLGFD YEGEEAEENCNGNDRVREDGDDGFMYEEVEPNVSNLRKKRKALKGFQKRVFGFLSNQLVQLRDMEARFEQRELERERERQGRENVLVEREQEWERKLEER EKKREEMEKDREKLTRQRIQEWEAMEKESEERERRRREEELIQEREWEDRMNRKRSEWKKRIDEMLSQHRAEMGQFQTRILHEQQNLTGQLLGIVSQWTT PTGLSDHTGASNHYLSQMMHNLHHVNGMVHGDSRVDGDTQDDQFIVDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.001G318600 [exp]	0	1
AT3G21320			unknown protein		Potri.003G045000 [exp]	5.83	0.8465
AT1G02420			Pentatricopeptide repeat (PPR)...		Potri.007G079400 [exp]	7.74	0.8203
AT4G27190			NB-ARC domain-containing disea...		Potri.019G036875 [exp]	9.69	0.8262
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.005G023700 [exp]	11.83	0.8153
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Potri.003G204400 [exp]	13.41	0.7664
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.005G014600 [exp]	14.42	0.8044
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Potri.014G192500 [exp]	15.49	0.8152
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Potri.004G130600 [exp]	22.97	0.8156
AT5G17900			microfibrillar-associated prot...		Potri.013G065600 [exp]	23.55	0.8166
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Potri.008G058600 [exp]	25.29	0.8180

Compare expression of checked genes

Potri.001G318600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.