Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13800 379 / 6e-132 Protein of unknown function (DUF803) (.1) AT3G23870 371 / 1e-128 Protein of unknown function (DUF803) (.1) AT1G71900 362 / 3e-125 Protein of unknown function (DUF803) (.1) AT1G34470 348 / 4e-119 Protein of unknown function (DUF803) (.1) AT4G09640 346 / 4e-118 Protein of unknown function (DUF803) (.1) AT2G21120 297 / 9e-100 Protein of unknown function (DUF803) (.1) AT4G38730 290 / 6e-97 Protein of unknown function (DUF803) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G009700 [exp] 361 / 1e-124 AT1G71900 463 / 9e-165 Protein of unknown function (DUF803) (.1) Potri.019G084600 [exp] 358 / 1e-123 AT1G71900 423 / 5e-149 Protein of unknown function (DUF803) (.1) Potri.013G114100 [exp] 358 / 1e-123 AT1G71900 439 / 4e-155 Protein of unknown function (DUF803) (.1) Potri.001G253100 [exp] 314 / 4e-106 AT1G34470 379 / 6e-131 Protein of unknown function (DUF803) (.1) Potri.009G047400 [exp] 311 / 8e-105 AT1G34470 414 / 5e-145 Protein of unknown function (DUF803) (.1) Potri.001G305700 [exp] 302 / 2e-101 AT2G21120 442 / 9e-157 Protein of unknown function (DUF803) (.1) Potri.019G001100 [exp] 298 / 5e-100 AT2G21120 433 / 5e-153 Protein of unknown function (DUF803) (.1) Potri.004G168900 [exp] 296 / 2e-99 AT2G21120 488 / 6e-175 Protein of unknown function (DUF803) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022549 [exp] 332 / 1e-113 AT4G13800 408 / 2e-143 Protein of unknown function (DUF803) (.1) Lus10015480 [exp] 332 / 3e-113 AT1G71900 548 / 0.0 Protein of unknown function (DUF803) (.1) Lus10006072 [exp] 326 / 2e-111 AT1G71900 503 / 0.0 Protein of unknown function (DUF803) (.1) Lus10019952 [exp] 311 / 5e-105 AT1G71900 454 / 4e-161 Protein of unknown function (DUF803) (.1) Lus10012716 [exp] 310 / 2e-104 AT2G21120 444 / 1e-157 Protein of unknown function (DUF803) (.1) Lus10016636 [exp] 298 / 4e-101 AT3G23870 312 / 2e-106 Protein of unknown function (DUF803) (.1) Lus10026280 [exp] 302 / 6e-101 AT2G21120 498 / 2e-178 Protein of unknown function (DUF803) (.1) Lus10010893 [exp] 290 / 8e-97 AT2G21120 416 / 8e-147 Protein of unknown function (DUF803) (.1) Lus10042393 [exp] 233 / 5e-75 AT4G38730 424 / 2e-150 Protein of unknown function (DUF803) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF05653 [poplar] [flax] Mg_trans_NIPA Magnesium transporter NIPA
Representative CDS sequence Show only first row Show all	>Potri.001G318700.1 pacid=42789791 polypeptide=Potri.001G318700.1.p locus=Potri.001G318700 ID=Potri.001G318700.1.v4.1 annot-version=v4.1 ATGGGGATATCACCTGACAATGTTCATGGACTTGTCTTGGCTGTCTCTTCAAGCGTTTTTATTGGGTCTAGCTTTATTGTAAAGAAGAAGGGTCTTCTTA AATCTGGGAATAATGGAACCAGAGCAGGTGCAGGAGGGCATTCGTACTTGTGTGAACCTTGGTGGTGGGCTGGAATGATTGCTATGATTGTCGGAGAAAT AGCTAATTTTGCAGCTTATGCATTTGCTCCTGCAATTCTTGTAACCCCATTGGGAGCTTTAAGTATTATTTTCAGTGCAGTGCTAGCTCATTTCATCTTG AAGGAGAAACTGCACATCTTTGGTGTCCTTGGATGTGTTCTTTGTGTGGTGGGATCGACAAGTATTGTGTTACATGCTCCGCAGGAGAGAGCTATTGAAT CTGTCAAGGAAGTATGGCACCTTGCTACAGAGCCAGGTTTTCTTGTCTACAGTGGAGTAGTTCTGGTTGTGGTTTCTGTCCTCATTTTCCGATTTGCACC ACTTTATGGTGAAAAAAATATGATTGTTTATGTCGGAATTTGCTCTCTCATGGGATCTATTACGGTTATGAGTGTCAAAGCCTTGGGAATTGCCTTAAAG CTGACATTTTCAGGATCGAACCAATTCATCTACTATCAGACATGGCTTTTCACTATAGTTGTGGTTTTTGCTTGCCTTTTGCAGATCAACTACTTGAACA AGGCACTGGACACCTTTAATACTGCAGTTATATCTCCAGTCTACTATGTTATGTTTACCAGTCTGACAATCCTTGCCAGCATGATCATGTTTAAGGACTG GGACTCACAAAATGCATCACAGATTGTAACTGAAGTGTGTGGTTTTATCACAATCTTATCTGGGACCTTTCTCCTTCATAGAACAAAGGATATGGGAAAT GCTCCAAATAGTAAATCTTCACCCGAAACTCCCGTCTCCACAAAGGAAAATTCCACCACAAGTGCAAATACTGAAGAGCAACAAATGGCTATATTTTAA
AA sequence Show only first row Show all	>Potri.001G318700.1 pacid=42789791 polypeptide=Potri.001G318700.1.p locus=Potri.001G318700 ID=Potri.001G318700.1.v4.1 annot-version=v4.1 MGISPDNVHGLVLAVSSSVFIGSSFIVKKKGLLKSGNNGTRAGAGGHSYLCEPWWWAGMIAMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFIL KEKLHIFGVLGCVLCVVGSTSIVLHAPQERAIESVKEVWHLATEPGFLVYSGVVLVVVSVLIFRFAPLYGEKNMIVYVGICSLMGSITVMSVKALGIALK LTFSGSNQFIYYQTWLFTIVVVFACLLQINYLNKALDTFNTAVISPVYYVMFTSLTILASMIMFKDWDSQNASQIVTEVCGFITILSGTFLLHRTKDMGN APNSKSSPETPVSTKENSTTSANTEEQQMAIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13800			Protein of unknown function (D...		Potri.001G318700 [exp]	0	1
AT1G03670			ankyrin repeat family protein ...		Potri.019G101700 [exp]	2.64	0.9014
AT3G03773			HSP20-like chaperones superfam...		Potri.013G062600 [exp]	11.40	0.7469
AT5G18970			AWPM-19-like family protein (....		Potri.008G200000 [exp]	13.56	0.8768
AT3G50180			Plant protein of unknown funct...		Potri.016G040000 [exp]	14.96	0.8081
AT3G19660			unknown protein		Potri.004G105900 [exp]	17.43	0.8139
AT3G15680			Ran BP2/NZF zinc finger-like s...		Potri.003G061300 [exp]	17.88	0.8454
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340200 [exp]	20.85	0.8504
AT5G38895			RING/U-box superfamily protein...		Potri.010G140300 [exp]	24.00	0.8096
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Potri.001G332100 [exp]	25.37	0.8103
AT3G15680			Ran BP2/NZF zinc finger-like s...		Potri.001G172700 [exp]	25.98	0.8453

Compare expression of checked genes

Potri.001G318700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.