Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23900 386 / 5e-119 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) AT1G53650 62 / 8e-10 CID8 CTC-interacting domain 8 (.1.2) AT3G14450 61 / 2e-09 CID9 CTC-interacting domain 9 (.1) AT1G32790 59 / 1e-08 CID11 CTC-interacting domain 11 (.1.2) AT3G49390 56 / 7e-08 CID10 CTC-interacting domain 10 (.1.2) AT5G24440 54 / 3e-07 CID13 CTC-interacting domain 13 (.1) AT4G10610 47 / 3e-05 ATRBP37, RBP37, CID12 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) AT1G34140 44 / 0.0007 PAB1 poly(A) binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G058300 [exp] 546 / 1e-179 AT3G23900 447 / 2e-142 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) Potri.001G448800 [exp] 60 / 3e-09 AT1G32790 363 / 2e-125 CTC-interacting domain 11 (.1.2) Potri.001G377500 [exp] 59 / 4e-09 AT3G14450 424 / 2e-150 CTC-interacting domain 9 (.1) Potri.011G095800 [exp] 59 / 5e-09 AT3G14450 391 / 3e-137 CTC-interacting domain 9 (.1) Potri.015G005400 [exp] 59 / 8e-09 AT1G32790 415 / 5e-145 CTC-interacting domain 11 (.1.2) Potri.012G022000 [exp] 57 / 4e-08 AT1G32790 428 / 4e-150 CTC-interacting domain 11 (.1.2) Potri.011G152700 [exp] 56 / 9e-08 AT4G10610 401 / 5e-140 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) Potri.017G051600 [exp] 51 / 8e-07 AT5G65260 288 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G095800 [exp] 51 / 8e-07 AT5G10350 285 / 3e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032590 [exp] 541 / 6e-178 AT3G23900 647 / 0.0 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) Lus10043159 [exp] 535 / 1e-175 AT3G23900 635 / 0.0 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) Lus10008851 [exp] 59 / 1e-08 AT3G49390 427 / 7e-150 CTC-interacting domain 10 (.1.2) Lus10032942 [exp] 57 / 3e-08 AT3G49390 421 / 2e-147 CTC-interacting domain 10 (.1.2) Lus10008275 [exp] 57 / 4e-08 AT1G32790 437 / 8e-153 CTC-interacting domain 11 (.1.2) Lus10033242 [exp] 57 / 4e-08 AT1G32790 436 / 1e-153 CTC-interacting domain 11 (.1.2) Lus10032941 [exp] 49 / 2e-05 AT1G32790 383 / 4e-133 CTC-interacting domain 11 (.1.2) Lus10027886 [exp] 48 / 4e-05 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10035678 [exp] 47 / 4e-05 AT2G35410 231 / 2e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002835 [exp] 48 / 5e-05 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0159 [poplar] [flax] E-set PF00630 [poplar] [flax] Filamin Filamin/ABP280 repeat
Representative CDS sequence Show only first row Show all	>Potri.001G319000.5 pacid=42793171 polypeptide=Potri.001G319000.5.p locus=Potri.001G319000 ID=Potri.001G319000.5.v4.1 annot-version=v4.1 ATGACGGATCGAAACAACTCCACAACCACTACTGCCGCCGTCACCACCACCAATACTTCAGCTGCTAAACCAATATGGATGAAGCAAGCAGAGGAAGCGA AACTAAAAAGCGAGGCAGAAAACACCGCGGCAGCGAAAGCCGCATTCGACGCGACATTCAAAGTATTATCAGATAAGGCCGAAAAAGCTGTCGATTCGGA TTCCGAGGAGGAAGACGCGGAGAAGGATTTGGCTAATAAGCCAGTGGGACCAGTTGACCCCGGGAAGTGCACGGCGGCAGGTGCTGGCATTGCTGGTGGG ACCGCGTGTGCACCAGCCACGTTTGTGGTTGTTACTAAGGATGCGGACGGGAGGAAAGTCCCGAATGGAGGCGCGGTGATTAGGGTTAGGGTTTCGCCGG GAGTTGGAGTTGGGGGAACGGAGCAGGAAGGGGCTGTGAAGGATATGGGAGATGGGACTTACACGGTTACGTATGTGGTGCCGAAAAGAGGGAATTATAT GGTTACTATTGAGTGTAATGGGAAAGCTATTATGGGGAGTCCTTTCCCTGTGTTCTTCAGTGCAGGCACTTCAACTGGAGGTTTGCTGGGTATGGCTCCT ACAACTACGTTTCCAAACCTTGTGAATCAGACCATGCCCAACATGCCAAATTACTCAGCCAGTGTTTCAGGGGCATTCCCTGCATTCCTAGGAATGACTC CAGGCATTGCTTCAGGTGCTTCAGGTGGTGCAATTTTGCCTGGAGTTGGAGCATCACTTGGGGAAGTTTGTCGAGAGTACCTCTATGGCCGGTGTGCAAA AATGGATTGCAAGTTGGGCCACCCTCCACACAGTTTACTCATGACTTTGTTAGCCCCAACAACTACAATGGGGACTCTTAGTCATGCGCCTATGGCGCCT TCGGCAGCTGCAATGGCTGCTGCTCAGGCTATTGTTGCTGCCAAAGCTCTTCAAGCTCATGCTGCTCAGGTGCAAGCACAAGCTCAGTCAGCCAAAGATT CATCTGGCTCGCCTGACAAAGCTCGGAAGGAGGATGCACTGAAGAAAACACTCCATGTTAGTAATCTCAGCCCGCTTCTGACAGTGGAACAGCTGAAACA GCTGTTTAGTTTTTGTGGCACAGTTGTCGAGTGTGCCATTGCCGATTCAAAACACTCTGCTTACATAGAATACTCGAAACCGGAAGAAGCAACCGCTGCT TTGGCCTTGAACAACATGGATGTTGGGGGTCGGCCTTTGAACGTTGAGATGGCTAAATCTCTTCCTCAGAAACCTCTTTTGAATTCTTCACTTGCTTCAT CTTCTCTACCGATGATGATGCAGCAAGCTGTTGCCATGCAACAGATGCAATTTCAACAGGCTTTGATTATGCAACAAACTATGACTGCGCAGCAGGCAGC TAACAAAGCTGCATCAATGAAGTCTGCAACAGAGTTAGCAGCAGCTAGAGCTGCAGAAATAAGTAAGAAGTTAAAAGCTGATGGGTTTGTCATTGGAGAA GAGGAAACAAAAGCAGAAACCAAGTCACCATCCCCACCTCAAGCAAGGTCTAGATCCAAGTCGAGATCCCCAATTAATTATCAAAGAAGGTTGAGGTCAC CTTCTTACTCACCTCCATCTCGCCGCAATAGAGACCGTAGATCTAGGTCTCCCTTTAGATTTCGCTATCACTCAAGGTATAACTATGGAAGGCGATCATA TAGAGATAGTAGAGATATTGTTGATAGAATGAGAATGCAGGATTCGGATAGATCACGTGGTCGTCATTCACCTGTTTCAAGGAGAAGTAGAAGCAGGAGC GCAAGCCCTCGAACAAGAAAGTCCTACAGAGATGATTCAGGCTCGCCAAAACGTCGCCTAGAAAGCTCAGCTCAAAGATCAAGAAAAGCAGCAGACAGTG GTTCAAGATCACCTAGGAGTCATGGGGGACGTCGGTTATCCCGAAGGAATATCACAGATAGCAAACTCAGATACAAAAGGCACTCACGCTCTAGGTCCAA ATCTGTGGAAGAGTCCAATGACAGAGTGAATGAAATCCAAGATAAAAAGTCAAAGCAACACGAGAGGAGATCTAGGTCATTATCTGTGGAGCTTAAACAC CATGGCAGGAGGCCATCCCATAGAAGTTCAGATGAAGATGAATCGAATCACAGAAGCCGGTCCAGGTCAAAATCTGTGGAAGTTAAACGCCATTCCTATG AGAAAGTGGGCAAAACTGAGGATGGGAGGCTGAAGCATCGTGATAGGAGGTCCAGGTCAAAATCTGTTGATGATAGGCACTGTTACAAGGAGAGAGGAAA TGAAAGCAGGGATAAAAAAACAAAGCATCGAGATAGAGTGCAGTCTAGGTCAATATCTGCTGAGTCAAATCATCACAGAAGAAGTAGGTCATCCCCAAAA GGTAGGGATGAGAGCAAGTCAAAGCACAGACGGCACTCCAGGCCAATATCTCCAGAAGGCAAGCGGCGTTCCAATCACAGGATAGATGAAAAGTCTAAGC ACTGCAGTAGACGAAGGTCAGTATCAGCTGAAGGTAAACATATCAGATCTCCAAGAAGTTCAGAGGAAAATAAATCAAAACGTAGGAGGCACTCTAGATC AAAATCTGCAGAACACAAGCGCCACTCAAATGATGAGGAGATAAAAAGAGAAGAAAATGAAACTCGTCATGAGCATACATCGGACAAAACAGAAGATGCC AATGAGGATGAAAATTCTTTTACGGACAAAGAAAAATGTAAAGATTGTGATTCAAAGGAACGGGTGGAAGACATGGTAATGGGGGGCAAATGTGTGCTGA ATTTAAGCAATGAAGAACCATTGTTACTGAAAGCTGTGCATCCCACAGCTGAACTGGAATGGTAA
AA sequence Show only first row Show all	>Potri.001G319000.5 pacid=42793171 polypeptide=Potri.001G319000.5.p locus=Potri.001G319000 ID=Potri.001G319000.5.v4.1 annot-version=v4.1 MTDRNNSTTTTAAVTTTNTSAAKPIWMKQAEEAKLKSEAENTAAAKAAFDATFKVLSDKAEKAVDSDSEEEDAEKDLANKPVGPVDPGKCTAAGAGIAGG TACAPATFVVVTKDADGRKVPNGGAVIRVRVSPGVGVGGTEQEGAVKDMGDGTYTVTYVVPKRGNYMVTIECNGKAIMGSPFPVFFSAGTSTGGLLGMAP TTTFPNLVNQTMPNMPNYSASVSGAFPAFLGMTPGIASGASGGAILPGVGASLGEVCREYLYGRCAKMDCKLGHPPHSLLMTLLAPTTTMGTLSHAPMAP SAAAMAAAQAIVAAKALQAHAAQVQAQAQSAKDSSGSPDKARKEDALKKTLHVSNLSPLLTVEQLKQLFSFCGTVVECAIADSKHSAYIEYSKPEEATAA LALNNMDVGGRPLNVEMAKSLPQKPLLNSSLASSSLPMMMQQAVAMQQMQFQQALIMQQTMTAQQAANKAASMKSATELAAARAAEISKKLKADGFVIGE EETKAETKSPSPPQARSRSKSRSPINYQRRLRSPSYSPPSRRNRDRRSRSPFRFRYHSRYNYGRRSYRDSRDIVDRMRMQDSDRSRGRHSPVSRRSRSRS ASPRTRKSYRDDSGSPKRRLESSAQRSRKAADSGSRSPRSHGGRRLSRRNITDSKLRYKRHSRSRSKSVEESNDRVNEIQDKKSKQHERRSRSLSVELKH HGRRPSHRSSDEDESNHRSRSRSKSVEVKRHSYEKVGKTEDGRLKHRDRRSRSKSVDDRHCYKERGNESRDKKTKHRDRVQSRSISAESNHHRRSRSSPK GRDESKSKHRRHSRPISPEGKRRSNHRIDEKSKHCSRRRSVSAEGKHIRSPRSSEENKSKRRRHSRSKSAEHKRHSNDEEIKREENETRHEHTSDKTEDA NEDENSFTDKEKCKDCDSKERVEDMVMGGKCVLNLSNEEPLLLKAVHPTAELEW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23900			RNA recognition motif (RRM)-co...		Potri.001G319000 [exp]	0	1
AT5G55100			SWAP (Suppressor-of-White-APri...		Potri.001G356800 [exp]	1.41	0.8913
AT5G15270			RNA-binding KH domain-containi...		Potri.004G100201 [exp]	1.73	0.8637
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.013G048100 [exp]	2.23	0.8583
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G172100 [exp]	2.44	0.8754
AT3G23900			RNA recognition motif (RRM)-co...		Potri.017G058300 [exp]	4.24	0.8342
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.003G074200 [exp]	4.24	0.8569
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Potri.003G203100 [exp]	4.58	0.8438
AT3G22430			unknown protein		Potri.010G235700 [exp]	5.47	0.8280
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.002G232800 [exp]	7.74	0.8325
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G242500 [exp]	8.48	0.8300

Compare expression of checked genes

Potri.001G319000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.