Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13850 140 / 1e-43 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT3G23830 137 / 3e-42 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT5G61030 129 / 4e-37 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT1G74230 122 / 7e-35 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT5G47320 105 / 4e-29 RPS19 ribosomal protein S19 (.1) AT3G08000 99 / 4e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 102 / 5e-27 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT1G18630 92 / 3e-24 GR-RBP6 glycine-rich RNA-binding protein 6 (.1) AT2G37220 91 / 7e-23 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G50250 90 / 2e-22 CP31B chloroplast RNA-binding protein 31B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G059000 [exp] 216 / 1e-73 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319800 [exp] 215 / 3e-73 AT4G13850 137 / 2e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.015G057400 [exp] 136 / 1e-40 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.012G061600 [exp] 136 / 2e-40 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.014G157300 [exp] 97 / 9e-27 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G340800 [exp] 91 / 7e-23 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.004G155300 [exp] 88 / 1e-22 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.012G090200 [exp] 90 / 4e-22 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.011G130300 [exp] 86 / 5e-22 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022551 [exp] 160 / 3e-51 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10032591 [exp] 160 / 4e-51 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 155 / 2e-49 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10043158 [exp] 152 / 3e-48 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10021154 [exp] 140 / 6e-42 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1) Lus10017852 [exp] 132 / 5e-39 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10040519 [exp] 137 / 2e-38 AT5G61030 189 / 2e-53 glycine-rich RNA-binding protein 3 (.1) Lus10034685 [exp] 130 / 3e-38 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10031534 [exp] 99 / 3e-27 AT3G08000 146 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015146 [exp] 99 / 4e-27 AT3G08000 145 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.001G319900.2 pacid=42787982 polypeptide=Potri.001G319900.2.p locus=Potri.001G319900 ID=Potri.001G319900.2.v4.1 annot-version=v4.1 ATGGCATTCTTTAACAAGCTCGGGAGCCTAGCGAGGCAGTCAATTTCCCAGAAGGGGCAAGTTCCAATGGTGTCCATGTTGAACTCTATTCGCTGCATGT CTTCATCCAAGCTTTTCATTGGAGGGCTTCCATGGTCAACTGATGACCAAACCCTTAAAGATGCATTTTCTGGCTTTGGGGAAGTGACAGAGGCAAGGGT TATCATGGATAGAGAGACCGGGAGGTCTCGTGGATTTGGGTTTGTTCATTACGACAGCGTTGAAAATGCCAGCGAAGCACTTTCAGCAATGGATGGCCAG AATTTGGGAGGAAGAACTGTTCGAGTGAGCTTTGCCGAGGAAAGGAGACCACCACAATCCTACAATGACAATCACCAAGGGAGTCCACCACAATCCTACA ATGACAATCACCAAGGGAGTCGAGGTTTTGATAATTAA
AA sequence Show only first row Show all	>Potri.001G319900.2 pacid=42787982 polypeptide=Potri.001G319900.2.p locus=Potri.001G319900 ID=Potri.001G319900.2.v4.1 annot-version=v4.1 MAFFNKLGSLARQSISQKGQVPMVSMLNSIRCMSSSKLFIGGLPWSTDDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEALSAMDGQ NLGGRTVRVSFAEERRPPQSYNDNHQGSPPQSYNDNHQGSRGFDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.001G319900 [exp]	0	1
AT2G15000			unknown protein		Potri.009G093400 [exp]	3.46	0.8375
AT1G60080			3'-5'-exoribonuclease family p...		Potri.006G051200 [exp]	4.47	0.8057
AT3G56570			SET domain-containing protein ...		Potri.004G135700 [exp]	5.74	0.7874
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Potri.012G108600 [exp]	10.00	0.7657
AT1G15870			Mitochondrial glycoprotein fam...		Potri.001G047600 [exp]	12.00	0.7816
AT4G26400			RING/U-box superfamily protein...		Potri.017G038300 [exp]	13.26	0.7635
AT4G28450			nucleotide binding;protein bin...		Potri.007G137300 [exp]	13.85	0.7667
AT2G26200			S-adenosyl-L-methionine-depend...		Potri.006G225600 [exp]	16.00	0.7235
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.001G303100 [exp]	17.88	0.6840
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.001G319800 [exp]	19.44	0.7763

Compare expression of checked genes

Potri.001G319900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.