Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13870 135 / 2e-39 WRNEXO, ATWRNEXO, WEX, ATWEX Werner syndrome-like exonuclease (.1.2) AT4G13885 0 / 1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G059200 [exp] 200 / 3e-64 AT4G13870 288 / 4e-97 Werner syndrome-like exonuclease (.1.2) Potri.016G028700 [exp] 39 / 0.0007 AT4G13870 104 / 5e-27 Werner syndrome-like exonuclease (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022556 [exp] 163 / 5e-50 AT4G13870 246 / 1e-80 Werner syndrome-like exonuclease (.1.2) Lus10016641 [exp] 104 / 1e-29 AT4G13870 108 / 2e-30 Werner syndrome-like exonuclease (.1.2) Lus10039164 [exp] 0 / 1 AT4G13870 105 / 2e-27 Werner syndrome-like exonuclease (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G320201.2 pacid=42789993 polypeptide=Potri.001G320201.2.p locus=Potri.001G320201 ID=Potri.001G320201.2.v4.1 annot-version=v4.1 ATGAGATATCCTGCATTGAAGTTCAGGGGTCAAATTTTGTATAGCAGAACTTCTATGGAGGTAGAAAAGGCTGCAAGGGAGCTTTTACAGAGTCTTAAAG TTAAAAAGGGTGTGTTGCCTGGAAAAACTGCAGTTATGCAGATATGTGGGAACACCAGCCTTTGTCATGCGATGCATATTTTTCATTCTGGAATCACAAG TCTGCAGTTTCTTCTAGAGGATTCTACACTTGTAAAAGTTGGTGTTGGCATAAGCAGTGACTGTGCTGAGGTTCTTAGAGATTATAATGTCTCAGTTAAA TCAGTGGAGGACCTTTCCTATCATGCAAATCAAAAGCTTGGTAGAGAACCTAAAACTTGGGGTCTTCGCTCTAGCAAAGATTCTTGTTTGCAAAGAGCTT CGAAAGCCCAACAGAATCAGACTTGGAAACTGGGAAGCAGATGTTTTATCAAAAGAACAACCTACAATATGCTGCCACTGATGCCATGGTTTCTTGGAAA CTATACCAAGTGTTAA
AA sequence Show only first row Show all	>Potri.001G320201.2 pacid=42789993 polypeptide=Potri.001G320201.2.p locus=Potri.001G320201 ID=Potri.001G320201.2.v4.1 annot-version=v4.1 MRYPALKFRGQILYSRTSMEVEKAARELLQSLKVKKGVLPGKTAVMQICGNTSLCHAMHIFHSGITSLQFLLEDSTLVKVGVGISSDCAEVLRDYNVSVK SVEDLSYHANQKLGREPKTWGLRSSKDSCLQRASKAQQNQTWKLGSRCFIKRTTYNMLPLMPWFLGNYTKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Potri.001G320201 [exp]	0	1
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Potri.010G162500 [exp]	1.00	0.8020
AT5G15270			RNA-binding KH domain-containi...		Potri.014G045000 [exp]	1.41	0.7871
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.008G027000 [exp]	3.00	0.7511
AT2G44980		ASG3	ALTERED SEED GERMINATION 3, SN...		Potri.014G056700 [exp]	20.61	0.6788
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Potri.015G043200 [exp]	20.97	0.6931
AT5G28530	FAR1_related	FRS10	FAR1-related sequence 10 (.1)		Potri.014G167000 [exp]	21.00	0.6965
AT2G01460			P-loop containing nucleoside t...		Potri.008G130200 [exp]	22.71	0.7212
AT1G77310			unknown protein		Potri.002G078800 [exp]	24.37	0.7173
					Potri.017G044300 [exp]	26.05	0.7119
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Potri.017G070500 [exp]	27.65	0.7189

Compare expression of checked genes

Potri.001G320201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.