Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RAD50.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31970 1879 / 0 ATRAD50, RAD50 DNA repair-recombination protein (RAD50) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016643 [exp] 1232 / 0 AT2G31970 1069 / 0.0 DNA repair-recombination protein (RAD50) (.1) Lus10016644 [exp] 572 / 0 AT2G31970 572 / 0.0 DNA repair-recombination protein (RAD50) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04423 [poplar] [flax] Rad50_zn_hook Rad50 zinc hook motif CL0023 [poplar] [flax] P-loop_NTPase PF13476 [poplar] [flax] AAA_23 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.001G320300.1 pacid=42787963 polypeptide=Potri.001G320300.1.p locus=Potri.001G320300 ID=Potri.001G320300.1.v4.1 annot-version=v4.1 ATGAGTACAGTAGACAAGATGCTGATAAAAGGAATCCGGAGCTTCGACCCGGAAAACAAACACGTCATCACCTTCTTAAGGCCTCTTACTCTCATCGTCG GCCCCAACGGCGCTGGAAAAACCACGATAATAGAGTGCTTGAAAGTTGCATGCACCGGAGAGTTGCCTCCGAATGCTAGGTCTGGTCACAGTTTCATCCA TGACCCTAAGGTTGCCGGTGAAACGGAGACGAAGGGGCAAATTAAGCTGCGGTTTAAGACCGCGGCCGCGAAGGATGTGGTGTGTATAAGGTCATTTCAG TTGACACAAAAGGCGTCAAAAATGGAGTATAAAGCCATTGAGAGTGTGCTTCAAACGATCAATCCACATACTGGAGAGAAAGTCTGCCTTAGCTATAGAT GTGCTGATATGGATCGAGAAATTCCTGCTTTGATGGGTGTCTCGAAGGCCATTCTAGAAAATGTTATATTCGTGCACCAGGATGAAGCTAATTGGCCTCT ACAAGATCCTTCTACGTTAAAGAAGAAATTCGATGATATCTTCTCTGCTACTCGATATACAAAAGCCTTGGAGGTCATCAAAAAGCTTCACAAGGATCAA GCTCAAGAGATAAAGACATACAAACTAAAATTAGAGAATCTTCAAACCTTGAAGGATGCTGCATATAAGCTTCGGGAAAGCATTGGTCAAGATCAAGAGA AAACAGAAATTTTAAAAGTCCAAAGTCAGGAGTTAGAAAGTAACCTTCAGAATTTGGATGCAAAAATTCATCATACTGAAGTAACTCTGAAAGATATGAG AAAATTACAGGACCAAATAACAATCAAGACTGCTGAAAGAAGCACTTTGTTCAGGGAGCAGCAGAGGCAGTATGCAGCTCTTGCTGAAGAAAATGAAGAC ACTGATGAAGAACTACAGGAGTGGAAAACCAAGTTTGACGAAAAGATTGCAAGTTTGGAATCGAATATTTGCAAATTGGAGAGGGAAATGAATGACATGG AGACAAAGGGTTCTTTTCTTAAGCAAAACATTAATGAGTATATCCGAGAGATCAGCAGGCTTCAGACTGAAGCTGAGGCTCATGCATCCTTGAAGAATGA AAGAGATTCCAATATCCAAAAAATGTATACAAGACATAATCTAGGTCCTCTTCCTAATGCCCCATTCAGTGATGATGTTGCTTTGAACCTCACAAATAGA TTAAAGTCAAGGTTGGTGGATCTTGATAAGGATCTACAAGATAAAAAGACATCAAATGATACTGAAGTTAAGAGAGCAGAGAATTGCTACTGGGATGCCA ATGAACGCTGGAAAAATACGGAGGCTCAAAAACAGGCTAAAGTAGAGATAAAGAATAGCATTTTAAATCGCATTACAGAGAAGGAAAGGGAGCACTCTTC CTTTGAAGAACAAATTTCACATGTTAATCTTTCTCACATTGATGAAAAAGAAAAGAACATGCGAATTGAGGTTGAGAGAAAGACAAATCAGCTAGCTGAA AGAGAATTTGAATCACACATTCGACAAAAGCAGAGTGAGCTGTATGGCATAGAGCAACAGATTAAGGTTCTTAATCGAGAGAAAGACATTTTGGCTGGAG ATTCTGAGGACAGAGTGAAACTGTCTCTAAAGAAAGTAGAGCTGGAAAACCATAAAAAGAAACATCGAAAAATAATTGATGAATGCAAGGATAAAATCAG AGGAGTGCTAAAAGGGAGGCTTCCTCCAGATAAGGATTTGAAGAAGGAAATTACTCAGACCCTAAGGGCTCTTGGGTTGGAGTTTGATGACTTGAATATG AAATCCCGTGAAGCTGAGAAGGAGGTAAATGTGTTGCAGATGAAAATACAAGAAGTTAATAATAACCTTTCCAAACAACGCAAGGACATGGACTCTAGGA AGAGATTTATTGAATCCAAACTCCAGTCCTTGGATCAACTGTCATTTAGTGTTGATTTATATCTCAAAGCATTGGAGTCGTCCAAGGAGAAAAGAGATGT TCAGAAAAGCAAGTACAATATTGCAGATGGTATGCGGCAGATGTTTGATCCTTTTGAACGAGTTGCCCGTGCTCATCATGTGTGCCCTTGCTGTGAACGC CCTTTCTCTGCTGAAGAGGAAGACGAATTTGTTAAAAAGCAAAGAGTGAAGGCTGCAAGTTCTGCAGAGCATATGAAAGTGTTGTCTATGGAATCTTCAA ATGCAGACACTCTTTTTCAGCAGTTGGACAAGCTTCGTATGGTTTATGAAGAATATACCAAAATTGGCAAGGAAACAATTCCTCTTGCTGAGAAAAACTT GAGTGAGCTAACTGAAGAGCTGGAGCAAAAGTCTCAAGCCCTTGATGATGTGTTGGGTGTTTTAGCTCAAACAAAGGCCGAAAAAGACTCAGTTGAGGCC TTGGTGCAACCTGTTGAAACAGCTGATAGGCTTTTCCAAGAAATTCAGACTTGGCAAAAGCAAGTCGATGATTTAGAATACAAGCTTGATTTTAGAGGGC AAGGTGTTAGAACCATGGAAGAAGTGCAGTCAGAGCTAAGTAGTTTGCAAGGCACAAAGGATAATTTGCATAATGAAGTGGAGAAGTTAAGGGATGAGCA AAGGTACATGGAAAATGATTTATCACATATTCAAATTCGGTGGCATGCTCTGCGGGAGGAAAAAGTTACGGCAGCTAATATATTGCGTGATGTTAAAAAG TCAGAAGAAGAGTTAGAACGTTTGGTAGAGGAAAAACATCAAGTTGAGCTGGAAGAGAAGCATTTGGCAGAGGCTGTTGGTCCTTTATCTAGGGAGAAAG AAAAATTACAGGGCGAACACAATGAGTTGAAAGTCCAACTTGAGCGGGAATACGAGGAACAAAAAAAACAGTTAGACAACTTTAAACAGGAGGTGGACAC ACTTGTTAGAATTGCATCAAAGATTAGAGAGTATTATAATTTAAAGAAAGGTGAAAGATTGAAAGAAATGCAAGAAAAACTATCTTTATCCGAGTCCCAA CTTCAAGGTTGTGATGCTAGGAAGCAGGAAATTTTAGCAGAACTCAATGACAGTAAAAATGCAGTGCGAAGTCAAGATAACCTTAGAAGAAGTATTGAGG ACAACTTAAATTACAGGAAAATAAAGGCTGAAGTGGAAGAGCTTACCAGGGAGATTGAATCATTGGAAGAGAGAATACTGAAGATTGGTGGGTTTTCCTC ATTTGAAGCTGAACTTGCAAAGCTATTACAAGAAAGAGAGAGACTTCTTTCAGAGTTGAACAGGTTCCGTGGAACAATGTCTGTTTACCAGAACAATATT TCGAAGAATAAAATTGATCTTAAACAGGTGCAATACAAAGATATTGATAAGCGATACTTTGATCAGTTAATCCAGCTAAAGACTACTGAAATGGCAAACA AGGACCTGGACAGATACTACAATGCACTTGACAAGGCACTCATGCGCTTCCACACAATGAAAATGGAGGAAATTAATAAAATCATTCGGGAATTGTGGCA ACAAACATACAGAGGACAGGATATAGATTATATTAGCATACATTCAGATTCTGAAGGTGCTGGGACTCGTTCTTACAGCTACAAGGTTGTCATGCAGACA GGTGACGCTGAGCTTGAAATGAGAGGAAGGTGTAGTGCTGGTCAGAAGGTCCTTGCTTCACTTATTATTCGGTTGGCTTTAGCCGAGACATTTTGCCTCC ACTGTGGAATACTAGCTCTAGATGAACCTACAACAAACTTGGATGGCCCAAATGCTGAGAGTCTTGCTGCAGCTCTCCTTAGAATCATGGAGGATAGGAA GGGCCAGGAGAATTTTCAACTGATTGTAATTACTCATGATGAGCGATTTGCTCAACTTATCGGTCAGCGACAGCATGCAGAAAGATACTATCGAGTTGCA AAAGATGATCATCAGCATAGCATAATTGAAGCCCAAGAGATTTTCGACTGA
AA sequence Show only first row Show all	>Potri.001G320300.1 pacid=42787963 polypeptide=Potri.001G320300.1.p locus=Potri.001G320300 ID=Potri.001G320300.1.v4.1 annot-version=v4.1 MSTVDKMLIKGIRSFDPENKHVITFLRPLTLIVGPNGAGKTTIIECLKVACTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAAKDVVCIRSFQ LTQKASKMEYKAIESVLQTINPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQ AQEIKTYKLKLENLQTLKDAAYKLRESIGQDQEKTEILKVQSQELESNLQNLDAKIHHTEVTLKDMRKLQDQITIKTAERSTLFREQQRQYAALAEENED TDEELQEWKTKFDEKIASLESNICKLEREMNDMETKGSFLKQNINEYIREISRLQTEAEAHASLKNERDSNIQKMYTRHNLGPLPNAPFSDDVALNLTNR LKSRLVDLDKDLQDKKTSNDTEVKRAENCYWDANERWKNTEAQKQAKVEIKNSILNRITEKEREHSSFEEQISHVNLSHIDEKEKNMRIEVERKTNQLAE REFESHIRQKQSELYGIEQQIKVLNREKDILAGDSEDRVKLSLKKVELENHKKKHRKIIDECKDKIRGVLKGRLPPDKDLKKEITQTLRALGLEFDDLNM KSREAEKEVNVLQMKIQEVNNNLSKQRKDMDSRKRFIESKLQSLDQLSFSVDLYLKALESSKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCER PFSAEEEDEFVKKQRVKAASSAEHMKVLSMESSNADTLFQQLDKLRMVYEEYTKIGKETIPLAEKNLSELTEELEQKSQALDDVLGVLAQTKAEKDSVEA LVQPVETADRLFQEIQTWQKQVDDLEYKLDFRGQGVRTMEEVQSELSSLQGTKDNLHNEVEKLRDEQRYMENDLSHIQIRWHALREEKVTAANILRDVKK SEEELERLVEEKHQVELEEKHLAEAVGPLSREKEKLQGEHNELKVQLEREYEEQKKQLDNFKQEVDTLVRIASKIREYYNLKKGERLKEMQEKLSLSESQ LQGCDARKQEILAELNDSKNAVRSQDNLRRSIEDNLNYRKIKAEVEELTREIESLEERILKIGGFSSFEAELAKLLQERERLLSELNRFRGTMSVYQNNI SKNKIDLKQVQYKDIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVVMQT GDAELEMRGRCSAGQKVLASLIIRLALAETFCLHCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVA KDDHQHSIIEAQEIFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Potri.001G320300 [exp]	0	1	RAD50.1
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	3.87	0.8514
AT1G02080			transcription regulators (.1.2...		Potri.014G058800 [exp]	6.00	0.8173
AT5G63380			AMP-dependent synthetase and l...		Potri.012G094900 [exp]	8.71	0.7661
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.011G094100 [exp]	8.71	0.8416
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.001G368600 [exp]	12.16	0.8140
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Potri.008G070300 [exp]	12.24	0.8090	APC1.1
AT2G26780			ARM repeat superfamily protein...		Potri.001G274500 [exp]	13.41	0.8001
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Potri.018G086300 [exp]	13.85	0.7753	HBT.2
AT3G12590			unknown protein		Potri.008G052700 [exp]	15.87	0.8082
AT4G24900			unknown protein		Potri.012G098000 [exp]	18.76	0.7924

Compare expression of checked genes

Potri.001G320300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.