Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14000 350 / 9e-122 Putative methyltransferase family protein (.1) AT2G43320 200 / 6e-62 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G031700 [exp] 200 / 5e-62 AT2G43320 527 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G127300 [exp] 197 / 5e-61 AT2G43320 536 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.009G006800 [exp] 46 / 2e-05 AT1G08125 370 / 4e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023222 [exp] 363 / 9e-127 AT4G14000 335 / 3e-116 Putative methyltransferase family protein (.1) Lus10008886 [exp] 324 / 2e-111 AT4G14000 300 / 2e-102 Putative methyltransferase family protein (.1) Lus10015953 [exp] 182 / 9e-56 AT2G43320 423 / 2e-149 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G321100.2 pacid=42790515 polypeptide=Potri.001G321100.2.p locus=Potri.001G321100 ID=Potri.001G321100.2.v4.1 annot-version=v4.1 ATGGCCACGAACTCAACCTTTCAGTTATTCTCTCCATCATCCGCAGCGTCAGGGTTCTTTGATTCTTCTACAGAGCCTCCTCCCCCTCCCCCTCCTCCTC CAGTTGAAGTTCTCTCCTCTGAGGTTTCTTTGAATGTTAAATGCTCTGTGGAGTCGGTTAACTTAGAAGATGGTCTTACTTTACTCAAGGGAAGGGTTAG TACTAAAGAGGTTTTTGGGTTGCCTAACTCAGATTTAGTACCTGGTGTATATGAAGGGGGGTTAAAGCTTTGGGAGGGTTCCCTAGACCTTATTAATGCT CTTCAAGCAGAGGTTCGAAATGGCCATTTATCGTTTAGTGGAAAGCGAGTTTTAGAGCTTGGGTGTGGCCATGGACTTCCTGGGATCTTTGCGTTCCTTG AGGGTGCAAGTGCTGTACATTTCCAGGATTTCAATGCTGAAGTCCTTCAATGTCTCACCATTCCCAATGTAAATGCCAATCTTTCAGAAAAATTGAGCCC TTCTACATCAGAAGATGCTAGTTCTGATACTGAAGGAGAACTACGTTTCTTTGCTGGTGACTGGAGCCAAGTCCATCAATGTCTTCCTCATGCTAACAAA AAAGAGAAGGACCTTGGTTGCAGCTTAGGGCATAGTCCACATTCTGGTTATGATATTGTTTTGATGGCAGAGACAATCTATTCAATCTCTGCTCAACACA ATCTCTACAGCCTTATAAAGAAGTGCTTGAGCCATCCTGGTGGAGTAGTATATATGGCAGCCAAAAAGCACTATTTTGGAGTAGGTGGAGGAACACGACA ATTTCTGTCTATGGTAGAAAAGGATGGTGCTATGGCTGCAAGTCTTGTTGCTGAAGTTGCGGATGGATCGTCTAATGTCCGCGAAGTGTGGAAGCTCTCA ATTTAG
AA sequence Show only first row Show all	>Potri.001G321100.2 pacid=42790515 polypeptide=Potri.001G321100.2.p locus=Potri.001G321100 ID=Potri.001G321100.2.v4.1 annot-version=v4.1 MATNSTFQLFSPSSAASGFFDSSTEPPPPPPPPPVEVLSSEVSLNVKCSVESVNLEDGLTLLKGRVSTKEVFGLPNSDLVPGVYEGGLKLWEGSLDLINA LQAEVRNGHLSFSGKRVLELGCGHGLPGIFAFLEGASAVHFQDFNAEVLQCLTIPNVNANLSEKLSPSTSEDASSDTEGELRFFAGDWSQVHQCLPHANK KEKDLGCSLGHSPHSGYDIVLMAETIYSISAQHNLYSLIKKCLSHPGGVVYMAAKKHYFGVGGGTRQFLSMVEKDGAMAASLVAEVADGSSNVREVWKLS I

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	0	1
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.002G226000 [exp]	1.00	0.9201
AT1G23860		SRZ21, SRZ-21, ...	RS-containing zinc finger prot...		Potri.019G050600 [exp]	1.73	0.9144
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G177400 [exp]	2.00	0.9145
AT4G34360			S-adenosyl-L-methionine-depend...		Potri.004G150200 [exp]	2.64	0.9079
AT2G24390			AIG2-like (avirulence induced ...		Potri.006G278900 [exp]	3.46	0.9099
AT4G17760			damaged DNA binding;exodeoxyri...		Potri.001G139100 [exp]	4.47	0.8966
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Potri.011G165400 [exp]	4.47	0.9130
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Potri.015G065800 [exp]	4.69	0.8958
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Potri.009G021200 [exp]	4.89	0.8766
AT1G20950			Phosphofructokinase family pro...		Potri.006G024500 [exp]	5.83	0.8821

Compare expression of checked genes

Potri.001G321100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.