Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14010 61 / 7e-13 RALFL32 ralf-like 32 (.1) AT4G15800 41 / 2e-05 RALFL33 ralf-like 33 (.1) AT1G02900 40 / 5e-05 RALF1, RALFL1, ATRALF1 RALF-LIKE 1, rapid alkalinization factor 1 (.1) AT2G33775 36 / 0.001 RALFL19 ralf-like 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G059800 [exp] 130 / 1e-40 AT4G14010 70 / 1e-16 ralf-like 32 (.1) Potri.001G321500 [exp] 45 / 4e-07 AT4G14010 54 / 3e-10 ralf-like 32 (.1) Potri.017G059900 [exp] 45 / 6e-07 AT4G14010 45 / 4e-07 ralf-like 32 (.1) Potri.005G025800 [exp] 42 / 6e-06 AT4G15800 138 / 1e-43 ralf-like 33 (.1) Potri.014G131800 [exp] 41 / 2e-05 AT4G15800 123 / 1e-37 ralf-like 33 (.1) Potri.017G059500 [exp] 41 / 3e-05 AT4G13950 96 / 2e-26 ralf-like 31 (.1) Potri.008G208200 [exp] 39 / 7e-05 AT4G15800 132 / 2e-41 ralf-like 33 (.1) Potri.004G044900 [exp] 38 / 0.0003 AT1G28270 103 / 4e-30 ralf-like 4 (.1) Potri.004G045000 [exp] 37 / 0.0004 AT1G28270 103 / 4e-30 ralf-like 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008885 [exp] 57 / 3e-11 AT4G14010 82 / 2e-21 ralf-like 32 (.1) Lus10023223 [exp] 55 / 1e-10 AT4G14010 83 / 2e-21 ralf-like 32 (.1) Lus10000502 [exp] 44 / 2e-06 AT4G15800 134 / 1e-41 ralf-like 33 (.1) Lus10037512 [exp] 44 / 2e-06 AT4G15800 131 / 9e-41 ralf-like 33 (.1) Lus10015172 [exp] 38 / 0.0003 AT4G15800 107 / 2e-31 ralf-like 33 (.1) Lus10020647 [exp] 37 / 0.001 AT4G15800 119 / 5e-36 ralf-like 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05498 [poplar] [flax] RALF Rapid ALkalinization Factor (RALF)
Representative CDS sequence Show only first row Show all	>Potri.001G321300.2 pacid=42793722 polypeptide=Potri.001G321300.2.p locus=Potri.001G321300 ID=Potri.001G321300.2.v4.1 annot-version=v4.1 ATGGAACGGAAGTGCTTCCCACATTTCTGTTTCCTTCTAGTGATCTTGAGCCTTGTAATATTGCAGCTCGGCGACAAGCTGGTGGCGTCGAAAACGAATG GATGCAATGGTTCGATAGCAGAATGCGATGAAGAATACGAGTTCTTGATGCCATCTCATGTTAGTAAAAGGTATCTTGAAGAGAAGAGGAAGTATATATC ACCTGGTGCTTTAAAGCCAGACCAGCCAGTTTGTAATGAAGGCGCTAGTGGTCAGTCTTATAGTAGTAGTTGTCTTCCACCTCCATCTAATTCTCCTTCT CGCGGTTGTTCCAAGTACTATCGTTGCAGGTCTGATGATTGA
AA sequence Show only first row Show all	>Potri.001G321300.2 pacid=42793722 polypeptide=Potri.001G321300.2.p locus=Potri.001G321300 ID=Potri.001G321300.2.v4.1 annot-version=v4.1 MERKCFPHFCFLLVILSLVILQLGDKLVASKTNGCNGSIAECDEEYEFLMPSHVSKRYLEEKRKYISPGALKPDQPVCNEGASGQSYSSSCLPPPSNSPS RGCSKYYRCRSDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14010		RALFL32	ralf-like 32 (.1)		Potri.001G321300 [exp]	0	1
AT1G61250		SC3	secretory carrier 3 (.1.2)		Potri.004G036600 [exp]	3.46	0.8876
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Potri.009G135300 [exp]	8.00	0.8585
AT3G54190			Transducin/WD40 repeat-like su...		Potri.006G113000 [exp]	14.69	0.8280
AT4G40045			unknown protein		Potri.008G025700 [exp]	18.46	0.8569
AT5G04800			Ribosomal S17 family protein (...		Potri.016G073750 [exp]	20.19	0.8416
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.010G009400 [exp]	21.90	0.8515
AT3G50810			Uncharacterised protein family...		Potri.004G149332 [exp]	25.78	0.8398
AT3G24030			hydroxyethylthiazole kinase fa...		Potri.001G053900 [exp]	28.91	0.8271
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.005G054100 [exp]	33.16	0.8368
AT2G37150			RING/U-box superfamily protein...		Potri.008G041201 [exp]	34.72	0.8573

Compare expression of checked genes

Potri.001G321300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.